Factsheet for Bra029343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42844	Canola	cytosol	96.88	97.75
Bra012989.1-P	Field mustard	cytosol	83.96	83.78
AT5G60980.3	Thale cress	cytosol	85.08	83.04
Bra035946.1-P	Field mustard	cytosol	83.52	82.6
KRH56802	Soybean	cytosol, nucleus	52.12	50.65
KRH03143	Soybean	cytosol, nucleus	51.67	50.43
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	50.11	45.0
GSMUA_Achr4P00640_001	Banana	cytosol	36.08	41.86
TraesCS7D01G414000.1	Wheat	cytosol	14.03	39.62
TraesCS7B01G322100.1	Wheat	cytosol	13.81	38.99
TraesCS7A01G421800.1	Wheat	cytosol	13.81	38.75
Bra015105.1-P	Field mustard	cytosol	38.98	37.72
Bra019707.1-P	Field mustard	cytosol	32.29	36.07
KXG39124	Sorghum	cytosol	11.14	31.25
Bra033707.1-P	Field mustard	cytosol	30.29	31.05
Os03t0418800-01	Rice	mitochondrion	36.08	30.98
Bra027517.1-P	Field mustard	cytosol, mitochondrion	30.73	29.87
Bra025122.1-P	Field mustard	cytosol	26.28	29.5
Bra037472.1-P	Field mustard	cytosol	31.85	29.18
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	35.41	29.17
Bra004006.1-P	Field mustard	cytosol	25.61	29.11
TraesCS3B01G431000.2	Wheat	cytosol	35.41	29.07
HORVU0Hr1G007150.3	Barley	cytosol	18.04	29.03
TraesCS3A01G398600.1	Wheat	cytosol	35.19	28.83
Zm00001d047289_P003	Maize	plasma membrane	37.42	28.77
HORVU3Hr1G089630.1	Barley	cytosol	34.52	28.55
Os07t0603100-01	Rice	extracellular	36.08	28.47
EER94684	Sorghum	cytosol	36.75	26.61
Bra004367.1-P	Field mustard	cytosol	27.62	26.16
Bra038318.1-P	Field mustard	cytosol	28.06	24.66
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	33.85	24.4
TraesCS2B01G202200.1	Wheat	cytosol	33.85	24.24
TraesCS2D01G183500.1	Wheat	cytosol	33.85	24.13
Zm00001d022071_P002	Maize	cytosol	31.18	23.89
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	33.41	23.81
Bra004005.1-P	Field mustard	cytosol	26.95	23.14
GSMUA_Achr1P24520_001	Banana	nucleus	43.65	19.84
OQU90215	Sorghum	cytosol	32.96	19.12

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra029343	EnsemblPlants:Bra029343.1	EnsemblPlants:Bra029343.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4EKM6	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00025457E9
SEG:seg	:	:	:	:	:

Description

AT5G60980 (E=7e-170) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA02:+:25759899..25762242

Molecular Weight (calculated)

47788.3 Da

IEP (calculated)

5.673

GRAVY (calculated)

-0.645

Length

449 amino acids

Sequence
(BLAST)

001: MAHSTSPGAE VVGRAFVEQY YHILHQSPGL VHRFYQDSSM LTRPDVTGSV TTVTTMQAIN EKIMSLKYED YTAEIETADA QESYERGVIV LVTGGLTGSD
101: NVRKRFSQTF FLAPQDKGYF VLNDVFRFLE EKDVAAHNGT TRDVQAPVEP ERVVVSHEAE VEPEPVASIE EDLDNVAEVY DPCEKDEGVV VDAEPIQPPP
201: QLSHSEVPSV PQGDPPKHSY ASILKLMNSS PAPARVVARN KPRPAPVSTN QRPTATPPAA SEASGVENVQ NSNNVDVEDD GHSIYVRNLP FDATPTQLEE
301: VFKSFGAIKH EGIQIRSNKQ GFCFGFVEFE TSSGKQSALE ASPVTIGDRQ VVLEEKKPNR GNSGGGGRGR YFGGRGGFRN ESFKGGRGGG GGGGGGRGGY
401: GRGEFSGRPK SSNTRSGGEG YQRVPQNGGG SGRGGGGGGR GGPRGGASS

Best Arabidopsis Sequence Match ( AT5G60980.4 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.