Factsheet for Bra037472.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 3
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018745.1-P
Bra032261.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	Bra018745.1-P	AT1G48630.1	21798944
AT5G48650.1	Bra032261.1-P	AT1G48630.1	21798944
AT5G48650.1	Bra039379.1-P	AT3G13222.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86290	Canola	cytosol	95.51	95.51
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.16	62.23
KRH46640	Soybean	cytosol	35.92	38.1
Solyc09g059310.2.1	Tomato	extracellular, nucleus	35.92	37.13
KRG99633	Soybean	cytosol	35.51	36.55
Bra015105.1-P	Field mustard	cytosol	34.08	35.99
PGSC0003DMT400051956	Potato	cytosol	34.29	35.22
PGSC0003DMT400053195	Potato	cytosol	18.16	34.77
Solyc06g083300.2.1	Tomato	nucleus	33.67	34.66
Solyc06g007780.2.1	Tomato	cytosol	33.27	34.1
VIT_00s0216g00030.t01	Wine grape	cytosol	36.12	33.52
Bra012989.1-P	Field mustard	cytosol	29.8	32.44
PGSC0003DMT400071822	Potato	cytosol, plastid	31.43	32.08
Bra029343.1-P	Field mustard	cytosol	29.18	31.85
Bra019707.1-P	Field mustard	cytosol	25.31	30.85
Bra035946.1-P	Field mustard	cytosol	28.37	30.62
VIT_00s2623g00010.t01	Wine grape	cytosol	16.53	29.03
Bra033707.1-P	Field mustard	cytosol	25.31	28.31
Bra025122.1-P	Field mustard	cytosol	22.45	27.5
Bra027517.1-P	Field mustard	cytosol, mitochondrion	25.71	27.27
Bra004006.1-P	Field mustard	cytosol	19.8	24.56
Bra004367.1-P	Field mustard	cytosol	22.04	22.78
Bra038318.1-P	Field mustard	cytosol	21.43	20.55
Bra004005.1-P	Field mustard	cytosol	20.0	18.74

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra037472	EnsemblPlants:Bra037472.1	EnsemblPlants:Bra037472.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
UniProt:M4F8R0	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000253F97A	SEG:seg	:

Description

AT5G48650 (E=1e-113) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:21283299..21285827

Molecular Weight (calculated)

53087.6 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.592

Length

490 amino acids

Sequence
(BLAST)

001: MSSTVSQMRN VIAITMDPAA VAPVVDPPVV GRAFVMQYYE VLHKHPQHLH RFYHEISKVG RVGQDGVMRD FYTLDGIREE LDTLSFGNFV SAKITSYHTQ
101: ESHNRGFVVL VTGWFTLKDA LKRKFTQTFF LAPQENGYFV LNDILRFDNG PEALDGDGSL TPCPVAAPTG GTQGSEPAAF ASVDSVCKEV SKPLNSNNAS
201: VAKESIVVPD SVNEEVPHTE KNYKEVAGDP MKVSDPDNEQ GNVSKKKSYA SVVAKDKSGV LAGSSLSPKQ TPKDQEHQVT SDVSTEQKVQ DQGHQVSSDL
301: SPVEKYDAVF EAVDDTEYGH NQGFDAVAEG TSIYVKHLPG NATIDMLESE FKKFGAIGNG GVQVVSQKGF GYPFGFVEFK DADAAQKAIE ASPLMIGGQK
401: AFVEEKRSTA RGNRGRGYGN RNVEGSGGNE YGHRDVIGDG GNGYGIRNEG GRGGGGRYGH GNYYNRGRRG GGRSFNRRGG YEYVASNNSY

Best Arabidopsis Sequence Match ( AT5G48650.1 )
(BLAST)

001: MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY
101: FTLNERSRRK FTQTFFLAPQ EKGFFVLNDI LRFVNDDAKD NVPETIDGEV VSGINSTTPT IINGMKGSEQ AACVSVNPVC KEVSKPLDNE NAKDNVLVPE
201: IANEVARTEI TCKEVADDSQ KNYDPDDGLA DAPKKSYASV LKVTKDKFGV PAVSLPSPKK IPKDQEHQAP SDPSTGQILK DQGQQASSDP SQVIESDTVS
301: ESVDASENGH NQEAVAEGTS IYVRHLPFNA NIDMLEAEFK QFGAITNGGI QVINQRGLGY PYGFVEFEEA DAAHRAIEAS PVKIGGLRAF VEEKLSTSRG
401: KRGNGNVGYG NRNVGVGMRG RGSYGYGYDY RRGGRGPGGG GRSFNRRGNE YVASINSY

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q84JH2]
SUBAcon: [extracellular,nucleus,cytosol,golgi,plasma membrane,vacuole,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.