Factsheet for PGSC0003DMT400053195

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014419
PGSC0003DMT400040923
PGSC0003DMT400041253
PGSC0003DMT400074094

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	PGSC0003DMT400014419	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400040923	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400041253	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400074094	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007780.2.1	Tomato	cytosol	90.62	48.54
VIT_00s2623g00010.t01	Wine grape	cytosol	48.44	44.44
PGSC0003DMT400051956	Potato	cytosol	73.44	39.41
PGSC0003DMT400071822	Potato	cytosol, plastid	58.59	31.25
VIT_00s0216g00030.t01	Wine grape	cytosol	60.55	29.36
KRH46640	Soybean	cytosol	51.56	28.57
KRG99633	Soybean	cytosol	51.17	27.52
Bra015105.1-P	Field mustard	cytosol	45.7	25.22
CDX77365	Canola	cytosol	45.31	24.47
CDY00813	Canola	cytosol	44.53	23.75
PGSC0003DMT400003713	Potato	cytosol	40.62	21.05
AT3G25150.2	Thale cress	plastid	46.09	20.1
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.77	19.43
CDX85353	Canola	cytosol	34.77	19.18
CDX86290	Canola	cytosol	36.33	18.98
Bra037472.1-P	Field mustard	cytosol	34.77	18.16
PGSC0003DMT400003781	Potato	cytosol	31.64	17.27
PGSC0003DMT400051923	Potato	cytosol	30.86	17.06
PGSC0003DMT400072921	Potato	cytosol	26.95	10.92
AT3G07250.1	Thale cress	nucleus	24.22	9.16

Protein Annotations

EnsemblPlants:PGSC0003DMT400053195	EnsemblPlantsGene:PGSC0003DMG400020647	Gene3D:3.10.450.50	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	PFAM:PF02136	PFscan:PS50177	PGSC:PGSC0003DMG400020647
SEG:seg	SUPFAM:SSF54427	UniParc:UPI000295AEF2	UniProt:M1BUK4	MapMan:16.9.1	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020647]

Coordinates

chr6:-:2493230..2497528

Molecular Weight (calculated)

28312.0 Da

IEP (calculated)

4.260

GRAVY (calculated)

-0.298

Length

256 amino acids

Sequence
(BLAST)

001: MEAAAAAVVQ QPVPAQVVGN AFVQQYYHIL HHSPGLVFRF YQDISKLGRP EDDGSMSITT TMEAINHKIL SLNYGDFKAE IKSVDSQESF NGGVHVFVTG
101: SLTGNDTLIR NFSQTFFLAP QDRGYFVLND MFRYVESVDQ HDLTEVPETD VVAPVTPELA SPPVQQNHIS EQSTLSVEEA NEGEVYNPPE NGDVPVEEEV
201: PVAEVVDEMQ DDSQIVVESN IKSEDAPKKS YASIVSLIGK KYHWKPIASA CFFQKG

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.