Factsheet for PGSC0003DMT400040923

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035497
PGSC0003DMT400051923
PGSC0003DMT400059678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	PGSC0003DMT400035497	AT4G35470.1	21798944
AT1G48630.1	PGSC0003DMT400059678	AT4G35470.1	21798944
AT1G48630.1	PGSC0003DMT400051923	AT5G43960.1	21798944
AT3G18130.1	PGSC0003DMT400035497	AT4G35470.1	21798944
AT3G18130.1	PGSC0003DMT400059678	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g040510.1.1	Tomato	cytosol	99.7	99.7
PGSC0003DMT400041253	Potato	cytosol	24.01	92.94
PGSC0003DMT400014419	Potato	cytosol	91.79	92.35
PGSC0003DMT400074094	Potato	cytosol	89.67	90.49
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	85.41	85.93
KRH60497	Soybean	endoplasmic reticulum, nucleus	83.59	84.62
KRH41792	Soybean	nucleus	83.28	84.31
Bra031014.1-P	Field mustard	cytosol	79.03	79.51
CDX95784	Canola	cytosol	78.42	79.38
CDX92200	Canola	extracellular	78.42	79.38
Bra025931.1-P	Field mustard	cytosol	79.03	79.27
Bra016570.1-P	Field mustard	cytosol	78.72	79.2
CDY26186	Canola	cytosol	60.18	79.2
CDY18497	Canola	cytosol	78.42	79.14
AT1G48630.1	Thale cress	cytosol	78.42	79.14
CDY71917	Canola	cytosol	58.66	79.1
Bra022282.1-P	Field mustard	cytosol	78.12	79.08
AT1G18080.1	Thale cress	cytosol	78.42	78.9
CDX95554	Canola	cytosol	78.12	78.83
CDX83869	Canola	cytosol	59.88	78.8
CDX96736	Canola	cytosol	59.88	78.8
CDY21720	Canola	cytosol	59.88	78.8
CDY60778	Canola	cytosol, plastid	59.88	78.8
AT3G18130.1	Thale cress	cytosol	77.81	78.53
CDX81860	Canola	cytosol	59.57	78.4
Bra032261.1-P	Field mustard	cytosol	77.2	77.68
Bra021294.1-P	Field mustard	cytosol	76.9	77.61
CDY59680	Canola	cytosol	52.58	76.89
CDY64888	Canola	cytosol	69.3	76.25
Bra018745.1-P	Field mustard	cytosol	69.0	76.17
CDX86074	Canola	cytosol	68.09	75.17
CDX93686	Canola	cytosol	68.09	75.17
CDY44104	Canola	cytosol	68.09	75.17
Zm00001d038923_P001	Maize	plastid	73.56	72.46
Zm00001d009480_P001	Maize	plasma membrane, plastid	73.25	72.16
TraesCS3D01G264000.1	Wheat	cytosol	72.64	71.99
TraesCS3B01G297300.1	Wheat	nucleus	72.64	71.99
Os01t0686800-02	Rice	cytosol	72.95	71.86
HORVU3Hr1G063670.2	Barley	cytosol	72.34	71.69
TraesCS3A01G263900.1	Wheat	nucleus	72.34	71.69
EES18632	Sorghum	cytosol	72.34	71.26
TraesCS1B01G398800.1	Wheat	plastid	71.73	70.45
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	71.43	70.15
TraesCS1D01G385000.1	Wheat	cytosol	70.82	69.55
EES01286	Sorghum	cytosol	69.91	69.28
Os05t0552300-02	Rice	cytosol	69.91	68.45
CDY52180	Canola	cytosol	32.83	66.67
HORVU1Hr1G083710.1	Barley	cytosol	66.26	62.11
GSMUA_Achr2P14580_001	Banana	cytosol	51.98	54.81
Bra000607.1-P	Field mustard	cytosol	53.5	44.44
CDX77303	Canola	cytosol	27.66	29.45
CDX77299	Canola	plastid	6.69	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	40.43	14.79
PGSC0003DMT400054611	Potato	nucleus	19.45	12.4

Protein Annotations

EntrezGene:102579003	MapMan:17.1.3.1.33	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1BAM8	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400015829	PGSC:PGSC0003DMG400015829	EnsemblPlants:PGSC0003DMT400040923	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296A33C
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006353816.1

Description

LeArcA1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015829]

Coordinates

chr12:-:40124998..40127183

Molecular Weight (calculated)

36106.6 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.177

Length

329 amino acids

Sequence
(BLAST)

001: MSQESLVLRG TMKAHTDWVT AIATPIDNSD MIVTSSRDKS IIVWSLTKEG SQYGVPRRRL TGHGHFVQDV VLSSDGMFAL SGSWDGELRL WDLQAGTTAR
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDKSI KLWNTLGECK YTIQDQDSHS DWVSCVRFSP NNLQPTIVSG SWDRTVKIWN LSNCKLRATL AGHAGYVNTA
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDSGSIIHA LCFSPNRYWL CAATESSIKI WDLESKSIVV DLRVDLKQET EMSGNATSTS GNSKTKVIYC
301: TSLSWSADGS TLFSGYTDGL IRVWGIGRY

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.