Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
19685898
nucleus: 26035336 plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
19685898
doi
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0511700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48630.1 | Os08t0511700-00 | AT4G35470.1 | 21798944 |
| AT3G18130.1 | Os08t0511700-00 | AT4G35470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0686800-02 | Rice | cytosol | 80.06 | 80.54 |
| Zm00001d038923_P001 | Maize | plastid | 79.76 | 80.24 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 78.87 | 79.34 |
| TraesCS1B01G398800.1 | Wheat | plastid | 78.87 | 79.1 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 78.57 | 78.81 |
| GSMUA_Achr1P11860_001 | Banana | cytosol | 63.69 | 78.39 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 77.68 | 77.91 |
| GSMUA_Achr1P05500_001 | Banana | cytosol | 62.8 | 77.57 |
| GSMUA_Achr5P10020_001 | Banana | cytosol | 69.35 | 77.15 |
| EES18632 | Sorghum | cytosol | 76.49 | 76.95 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 70.54 | 72.48 |
| Solyc03g119040.2.1 | Tomato | nucleus | 70.24 | 72.39 |
| PGSC0003DMT400074094 | Potato | cytosol | 70.24 | 72.39 |
| Solyc06g069010.2.1 | Tomato | nucleus | 69.94 | 72.09 |
| Bra018745.1-P | Field mustard | cytosol | 63.69 | 71.81 |
| Bra025931.1-P | Field mustard | cytosol | 69.94 | 71.65 |
| CDY64888 | Canola | cytosol | 63.69 | 71.57 |
| PGSC0003DMT400014419 | Potato | cytosol | 69.64 | 71.56 |
| Bra031014.1-P | Field mustard | cytosol | 69.64 | 71.56 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 69.05 | 71.38 |
| CDY26186 | Canola | cytosol | 52.98 | 71.2 |
| AT1G48630.1 | Thale cress | cytosol | 68.75 | 70.86 |
| AT3G18130.1 | Thale cress | cytosol | 68.75 | 70.86 |
| CDY44104 | Canola | cytosol | 62.8 | 70.81 |
| CDX86074 | Canola | cytosol | 62.8 | 70.81 |
| CDX93686 | Canola | cytosol | 62.8 | 70.81 |
| CDY21720 | Canola | cytosol | 52.68 | 70.8 |
| CDX81860 | Canola | cytosol | 52.68 | 70.8 |
| CDY60778 | Canola | cytosol, plastid | 52.68 | 70.8 |
| KRH41792 | Soybean | nucleus | 68.45 | 70.77 |
| CDX92200 | Canola | extracellular | 68.45 | 70.77 |
| CDX95784 | Canola | cytosol | 68.45 | 70.77 |
| CDY18497 | Canola | cytosol | 68.45 | 70.55 |
| CDX95554 | Canola | cytosol | 68.45 | 70.55 |
| CDY71917 | Canola | cytosol | 51.19 | 70.49 |
| Bra022282.1-P | Field mustard | cytosol | 68.15 | 70.46 |
| AT1G18080.1 | Thale cress | cytosol | 68.45 | 70.34 |
| Bra016570.1-P | Field mustard | cytosol | 68.45 | 70.34 |
| Bra032261.1-P | Field mustard | cytosol | 68.45 | 70.34 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 73.21 | 70.09 |
| PGSC0003DMT400040923 | Potato | cytosol | 68.45 | 69.91 |
| Solyc12g040510.1.1 | Tomato | cytosol | 68.45 | 69.91 |
| CDY59680 | Canola | cytosol | 46.73 | 69.78 |
| CDX83869 | Canola | cytosol | 51.79 | 69.6 |
| CDX96736 | Canola | cytosol | 51.79 | 69.6 |
| Bra021294.1-P | Field mustard | cytosol | 66.96 | 69.02 |
| PGSC0003DMT400041253 | Potato | cytosol | 17.26 | 68.24 |
| CDY52180 | Canola | cytosol | 30.95 | 64.2 |
| KRH48610 | Soybean | cytosol | 53.27 | 52.65 |
| Bra000607.1-P | Field mustard | cytosol | 48.21 | 40.91 |
| CDX77303 | Canola | cytosol | 24.7 | 26.86 |
| CDX77299 | Canola | plastid | 5.36 | 18.56 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 38.1 | 14.24 |
| Os03t0625900-01 | Rice | nucleus | 16.67 | 10.96 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | EntrezGene:4339539 | ProteinID:AAT39277.1 | ProteinID:AAT85192.1 | EMBL:AK062179 |
| EMBL:AK065272 | EMBL:AK121567 | ProteinID:BAF18168.1 | ProteinID:BAS95226.1 | ProteinID:EEE64615.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlantsGene:Os05g0552300 | EnsemblPlants:Os05t0552300-02 |
| PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 |
| PANTHER:PTHR19868:SF3 | UniProt:Q6L4F8 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000378078 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015640003.1 | SEG:seg |
Description
G-protein beta-subunit-like polypeptide, receptor for activated C kinase 1BSimilar to Guanine nucleotide-binding protein beta subunit-like protein (GPB-LR) (RWD). (Os05t0552300-02)
Coordinates
chr5:-:27459362..27461861
Molecular Weight (calculated)
36454.0 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.122
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQESLTLA GVLRGHNDMV TAIAAPIDNS PFIVSSSRDK SLLVWDITNP STAVATDPEA APPEYGVSYR RLTGHSHFVQ DVVLSSDGQF ALSGSWDGEL
101: RLWDLATGRT TRRFVGHTKD VLSVAFSVDN RQIVSAARDN TIKLWNTLGE CKYTIGGDHG AGEGHTGWVS CVRFSPNPMA PTIVSGSWDR SVKVWNLTNC
201: KLRTKLEGHN GYVNAVAVSP DGSLCASGGK DGTTLLWDLT EGKMLYKLDA GAIIHSLCFS PNRYWLCAAT EDSVKIWDLE SKLVMQDLKP EVQAFKSQML
301: YCTSLSWSAD GSTLFAGYTD GTIRVWKVSG FGGYAI
101: RLWDLATGRT TRRFVGHTKD VLSVAFSVDN RQIVSAARDN TIKLWNTLGE CKYTIGGDHG AGEGHTGWVS CVRFSPNPMA PTIVSGSWDR SVKVWNLTNC
201: KLRTKLEGHN GYVNAVAVSP DGSLCASGGK DGTTLLWDLT EGKMLYKLDA GAIIHSLCFS PNRYWLCAAT EDSVKIWDLE SKLVMQDLKP EVQAFKSQML
301: YCTSLSWSAD GSTLFAGYTD GTIRVWKVSG FGGYAI
001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
Arabidopsis Description
RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.