CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60497	Soybean	endoplasmic reticulum, nucleus	56.18	58.77
KRH41792	Soybean	nucleus	55.59	58.15
Os01t0686800-02	Rice	cytosol	54.12	55.09
TraesCS3D01G264000.1	Wheat	cytosol	53.53	54.82
TraesCS3B01G297300.1	Wheat	nucleus	53.53	54.82
HORVU3Hr1G063670.2	Barley	cytosol	53.53	54.82
Zm00001d038923_P001	Maize	plastid	53.82	54.79
TraesCS3A01G263900.1	Wheat	nucleus	53.24	54.52
Zm00001d009480_P001	Maize	plasma membrane, plastid	53.24	54.19
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	52.94	53.73
TraesCS1B01G398800.1	Wheat	plastid	52.94	53.73
TraesCS1D01G385000.1	Wheat	cytosol	52.65	53.43
EES01286	Sorghum	cytosol	52.06	53.31
EES18632	Sorghum	cytosol	52.35	53.29
Os05t0552300-02	Rice	cytosol	52.65	53.27
GSMUA_Achr2P14580_001	Banana	cytosol	43.53	47.44
HORVU1Hr1G083710.1	Barley	cytosol	48.82	47.29
KRH11768	Soybean	cytosol, mitochondrion, nucleus	11.18	14.79
KRH36772	Soybean	nucleus	18.82	12.9

Protein Annotations

EntrezGene:100819000	MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EMBL:ACUP02004253	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_07G100800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KJ39	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH48610	ProteinID:KRH48610	ProteinID:KRH48610.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000233921C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:9555341..9557676

Molecular Weight (calculated)

37327.5 Da

IEP (calculated)

4.829

GRAVY (calculated)

-0.149

Length

340 amino acids

Sequence
(BLAST)

001: MTEAEVFVFR GTLRGHTDTV TAIATPENNN NNSDKIIVSS SRDNSLIVWR LTKEYSNSYG VLHRRLTGHS HFVSDVALSS DADFAVSASW DGELRLWDLS
101: TGATKLRFIG HAKDVLSVAL LNDSVIISGS RDHTIKAWNT CGTCMSTVDN GSGDGHTDWV SCVRFIPDAA PPRLVSASWD GSVRVWDVDV DVDKGALRKR
201: FTLSGHEGYV NVVAVSPDAS LVASGGKDGV VLLWDMAGGV KIYEFEVGSV VHGLWFSPNR YWMCIATDES VRVWDLESNS IIKDLNVNGN NDHYNYVNGG
301: TEITANNKDI YCTSMNWDAD GNTLFCGYTD GLIRIWEVIS

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.