CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	EES14257	AT4G35470.1	21798944
AT3G18130.1	EES14257	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0686800-02	Rice	cytosol	86.14	85.63
HORVU3Hr1G063670.2	Barley	cytosol	84.94	84.94
TraesCS3D01G264000.1	Wheat	cytosol	84.64	84.64
TraesCS3B01G297300.1	Wheat	nucleus	84.64	84.64
TraesCS3A01G263900.1	Wheat	nucleus	84.34	84.34
EES18632	Sorghum	cytosol	82.23	81.74
GSMUA_Achr1P05500_001	Banana	cytosol	64.16	78.31
GSMUA_Achr5P10020_001	Banana	cytosol	70.48	77.48
GSMUA_Achr1P11860_001	Banana	cytosol	63.55	77.29
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	71.69	72.78
Solyc03g119040.2.1	Tomato	nucleus	71.39	72.7
PGSC0003DMT400074094	Potato	cytosol	71.08	72.39
KRH60497	Soybean	endoplasmic reticulum, nucleus	70.78	72.31
PGSC0003DMT400014419	Potato	cytosol	70.78	71.87
Solyc06g069010.2.1	Tomato	nucleus	70.48	71.78
KRH41792	Soybean	nucleus	70.18	71.69
Bra025931.1-P	Field mustard	cytosol	70.78	71.65
Bra031014.1-P	Field mustard	cytosol	70.48	71.56
Bra016570.1-P	Field mustard	cytosol	69.88	70.95
AT1G48630.1	Thale cress	cytosol	69.58	70.86
AT3G18130.1	Thale cress	cytosol	69.58	70.86
PGSC0003DMT400041253	Potato	cytosol	18.07	70.59
CDY26186	Canola	cytosol	53.01	70.4
AT1G18080.1	Thale cress	cytosol	69.28	70.34
CDY21720	Canola	cytosol	52.71	70.0
CDY60778	Canola	cytosol, plastid	52.71	70.0
CDX81860	Canola	cytosol	52.71	70.0
Solyc12g040510.1.1	Tomato	cytosol	69.28	69.91
PGSC0003DMT400040923	Potato	cytosol	69.28	69.91
CDX92200	Canola	extracellular	68.37	69.85
CDX95784	Canola	cytosol	68.37	69.85
Bra032261.1-P	Field mustard	cytosol	68.67	69.72
CDY18497	Canola	cytosol	68.37	69.63
CDX95554	Canola	cytosol	68.37	69.63
CDY64888	Canola	cytosol	62.65	69.57
Bra022282.1-P	Field mustard	cytosol	68.07	69.54
Bra018745.1-P	Field mustard	cytosol	62.35	69.46
CDX96736	Canola	cytosol	52.11	69.2
CDX83869	Canola	cytosol	52.11	69.2
CDX86074	Canola	cytosol	61.75	68.79
CDY44104	Canola	cytosol	61.75	68.79
CDX93686	Canola	cytosol	61.75	68.79
CDY71917	Canola	cytosol	50.3	68.44
Bra021294.1-P	Field mustard	cytosol	66.87	68.1
CDY59680	Canola	cytosol	45.18	66.67
CDY52180	Canola	cytosol	31.33	64.2
KRH48610	Soybean	cytosol	53.31	52.06
Bra000607.1-P	Field mustard	cytosol	46.69	39.14
CDX77303	Canola	cytosol	23.8	25.57
CDX77299	Canola	plastid	6.02	20.62
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	37.95	14.02
EER91177	Sorghum	cytosol, nucleus, plastid	16.57	10.74

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EntrezGene:8068033	UniProt:C5XGU1	EnsemblPlants:EES01286	ProteinID:EES01286
ProteinID:EES01286.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0016020	GO:GO:0050832	GO:GO:0060267
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G261100
SUPFAM:SSF50978	unigene:Sbi.14285	UniParc:UPI0001A846CB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002456166.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:59883669..59885860

Molecular Weight (calculated)

36114.5 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.157

Length

332 amino acids

Sequence
(BLAST)

001: MAGAQETLVL AGVMRGHNGV VTAIATPIDN SDLIVSSSRD KSLLVWDLRN PVQAAGDGTT TADYGVPLRR LTGHSHFVQD VVLSSDGQFA LSGSWDGDLR
101: LWNLTTGETT CRFVGHEKDV LSVAFSADNR QIVSASRDRT IKLWNTLGEC KYTIGGDLGG AEGHNGWVSC VRFSPNTYQP TIVSGSWDRS VKVWNLTNCK
201: LRCTLQGHGG YVNAVAVSPD GSLCASGGKD HVTLLWDLTE GKRLYALDAG DIIHSLCFSP NRYWLCAATQ ESIKIWDLES KHVVQDLKPE VSSTKDQMLY
301: CTCLSWSADG STLYAGYTDG SIRIYKISAY GY

Best Arabidopsis Sequence Match ( AT3G18130.1 )
(BLAST)

001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY

Arabidopsis Description

RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.