Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400035497 | |
| PGSC0003DMT400051923 | |
| PGSC0003DMT400059678 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71917 | Canola | cytosol | 77.65 | 27.05 |
| CDY21720 | Canola | cytosol | 77.65 | 26.4 |
| CDY26186 | Canola | cytosol | 77.65 | 26.4 |
| CDY60778 | Canola | cytosol, plastid | 77.65 | 26.4 |
| CDX81860 | Canola | cytosol | 77.65 | 26.4 |
| CDX96736 | Canola | cytosol | 76.47 | 26.0 |
| CDX83869 | Canola | cytosol | 76.47 | 26.0 |
| PGSC0003DMT400014419 | Potato | cytosol | 95.29 | 24.77 |
| PGSC0003DMT400040923 | Potato | cytosol | 92.94 | 24.01 |
| PGSC0003DMT400074094 | Potato | cytosol | 91.76 | 23.93 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 83.53 | 21.71 |
| KRH41792 | Soybean | nucleus | 81.18 | 21.23 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 81.18 | 21.23 |
| CDX92200 | Canola | extracellular | 78.82 | 20.62 |
| CDX95784 | Canola | cytosol | 78.82 | 20.62 |
| CDX95554 | Canola | cytosol | 78.82 | 20.55 |
| CDY18497 | Canola | cytosol | 78.82 | 20.55 |
| Bra022282.1-P | Field mustard | cytosol | 77.65 | 20.31 |
| AT3G18130.1 | Thale cress | cytosol | 77.65 | 20.25 |
| Bra031014.1-P | Field mustard | cytosol | 77.65 | 20.18 |
| Bra025931.1-P | Field mustard | cytosol | 77.65 | 20.12 |
| AT1G48630.1 | Thale cress | cytosol | 76.47 | 19.94 |
| Bra021294.1-P | Field mustard | cytosol | 76.47 | 19.94 |
| Bra032261.1-P | Field mustard | cytosol | 76.47 | 19.88 |
| Bra016570.1-P | Field mustard | cytosol | 75.29 | 19.57 |
| AT1G18080.1 | Thale cress | cytosol | 75.29 | 19.57 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 74.12 | 18.98 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 74.12 | 18.98 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 74.12 | 18.98 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 74.12 | 18.98 |
| Os01t0686800-02 | Rice | cytosol | 72.94 | 18.56 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 72.94 | 18.56 |
| Zm00001d038923_P001 | Maize | plastid | 72.94 | 18.56 |
| EES18632 | Sorghum | cytosol | 71.76 | 18.26 |
| EES01286 | Sorghum | cytosol | 70.59 | 18.07 |
| CDY59680 | Canola | cytosol | 47.06 | 17.78 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 69.41 | 17.61 |
| TraesCS1B01G398800.1 | Wheat | plastid | 69.41 | 17.61 |
| Os05t0552300-02 | Rice | cytosol | 68.24 | 17.26 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 67.06 | 17.01 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 69.41 | 16.81 |
| CDX77299 | Canola | plastid | 15.29 | 13.4 |
| CDY64888 | Canola | cytosol | 47.06 | 13.38 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 48.24 | 13.14 |
| Bra018745.1-P | Field mustard | cytosol | 45.88 | 13.09 |
| CDY44104 | Canola | cytosol | 44.71 | 12.75 |
| CDX86074 | Canola | cytosol | 44.71 | 12.75 |
| CDX93686 | Canola | cytosol | 44.71 | 12.75 |
| Bra000607.1-P | Field mustard | cytosol | 57.65 | 12.37 |
| CDY52180 | Canola | cytosol | 22.35 | 11.73 |
| PGSC0003DMT400054611 | Potato | nucleus | 28.24 | 4.65 |
| CDX77303 | Canola | cytosol | 10.59 | 2.91 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 15.29 | 1.45 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1BB53 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG400015970 | PGSC:PGSC0003DMG400015970 |
| EnsemblPlants:PGSC0003DMT400041253 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000295B484 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : | : |
Description
ArcA2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015970]
Coordinates
chr1:+:37551259..37551871
Molecular Weight (calculated)
9279.0 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.159
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MKAHTDWVTA IATPIDNSDM IVTSSRDKSI IVSSLTKDGA QYGVPRRCLT GHGHFVQDVV LSSDGMFALS GSWDGELRLW DLQGK
001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
Arabidopsis Description
RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.