Factsheet for PGSC0003DMT400051923

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083730.2.1	Tomato	nucleus	93.52	95.16
KRH67452	Soybean	cytosol	52.7	53.98
KRG95733	Soybean	cytosol	51.62	53.11
VIT_07s0005g04300.t01	Wine grape	cytosol	51.84	51.61
AT5G43960.1	Thale cress	cytosol	48.81	50.22
Bra033707.1-P	Field mustard	cytosol	45.79	48.4
CDY13135	Canola	mitochondrion	47.08	47.19
Bra027517.1-P	Field mustard	cytosol, mitochondrion	46.87	46.97
CDY36961	Canola	cytosol	47.3	46.5
CDX94739	Canola	cytosol	41.04	46.34
CDY22322	Canola	cytosol	40.82	46.32
PGSC0003DMT400003781	Potato	cytosol	44.49	43.92
PGSC0003DMT400053195	Potato	cytosol	17.06	30.86
PGSC0003DMT400051956	Potato	cytosol	27.86	27.04
PGSC0003DMT400071822	Potato	cytosol, plastid	25.27	24.38
PGSC0003DMT400003713	Potato	cytosol	24.41	22.87
PGSC0003DMT400072921	Potato	cytosol	19.01	13.92

Protein Annotations

EntrezGene:102580874	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
UniProt:M1BSG7	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	EnsemblPlantsGene:PGSC0003DMG400020152	PGSC:PGSC0003DMG400020152	EnsemblPlants:PGSC0003DMT400051923	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0002951540	RefSeq:XP_006352724.1	SEG:seg	:	:

Description

Ras-GTPase-activating protein-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020152]

Coordinates

chr6:+:58630179..58638893

Molecular Weight (calculated)

51164.8 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.582

Length

463 amino acids

Sequence
(BLAST)

001: MASSYSTPIG ATQVGSYFVQ QYYQVLQQQP DYVHQFYTDA SSIVRVDGDS NESASALVQI HTLIMSMSFS GIKIKTINSL ESWNGGVLVV ASGSVKLKDI
101: NGWRNFVQTF LLAPQEKGYF VLNDVFHFVN EERSELVQAP VGSQNNLDAQ PTSSNLLAEP PAVHDYALEV EATEYVNSVN IQGNDAVEEY SYPEHDHENL
201: YEAEAEAEYE YEYEYESEYE HDEADPEADV PEETHLGEET AQVRSFEEET SFPSNVVEVV PEPEPAAEEP VGEPSKLSYA SILRAPKGPA PSVRIQPSYT
301: KSAPPVSEWQ PPVEQSISMP PAAPEASLDL ADEGFSQEGE SKSVYVRNLP STVSSLDILQ EFKNYGKIKQ DGVFLRNRKD VGICYAFVEF EEVQGVQNAI
401: KASPIQLAGR QVYIEERRPT SSSVSRGGRS GRGRGRGGRP TGRPFGRGSN PDDRVKSNGY RGI

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.