CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22322	Canola	cytosol	92.68	93.14
AT5G43960.1	Thale cress	cytosol	83.66	76.22
CDY13135	Canola	mitochondrion	83.17	73.81
CDY36961	Canola	cytosol	83.41	72.61
KRH67452	Soybean	cytosol	50.24	45.58
KRG95733	Soybean	cytosol	49.76	45.33
VIT_07s0005g04300.t01	Wine grape	cytosol	50.73	44.73
Solyc06g083730.2.1	Tomato	nucleus	46.59	41.98
PGSC0003DMT400051923	Potato	cytosol	46.34	41.04
CDY42844	Canola	cytosol	30.49	28.09
CDY16827	Canola	cytosol	29.76	26.87
CDX77365	Canola	cytosol	29.27	25.32
CDY23092	Canola	mitochondrion	29.02	25.27
CDY00813	Canola	cytosol	29.02	24.79
CDX85353	Canola	cytosol	27.56	24.35
CDY02179	Canola	plastid	29.27	23.81
CDX87195	Canola	plastid	29.76	23.46
CDY47006	Canola	cytosol	24.15	22.86
CDY51206	Canola	cytosol	22.68	22.68
CDX86290	Canola	cytosol	27.07	22.65
CDY36616	Canola	cytosol	22.2	22.36
CDY02983	Canola	cytosol	21.95	22.06
CDX98124	Canola	cytosol	21.46	21.95
CDY36405	Canola	cytosol	21.46	21.73
CDY40904	Canola	nucleus	20.0	19.03
CDY50308	Canola	cytosol	19.27	18.9
CDY54146	Canola	cytosol	19.76	18.45
CDY07356	Canola	cytosol	16.83	17.47
CDY04271	Canola	cytosol	17.8	16.98
CDY04270	Canola	cytosol	17.07	16.79
CDX95953	Canola	cytosol	19.02	16.67
CDY07355	Canola	cytosol	17.8	13.96

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078E294	EnsemblPlants:CDX94739	ProteinID:CDX94739
ProteinID:CDX94739.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00158162001
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI0004EF097A	SEG:seg	:	:	:	:

Description

BnaC07g17480D

Coordinates

chrLK031884:-:592704..595192

Molecular Weight (calculated)

45725.7 Da

IEP (calculated)

4.545

GRAVY (calculated)

-0.669

Length

410 amino acids

Sequence
(BLAST)

001: MIRIDGDSSD TADTLLHIHN MVMSLNFTAI EVKTINSVES WEGGVLVAIS GSVKTEEFSN RRSFMHTFFL APQEKGYFVL NDIFQFIDEG LVFSHHQPSY
101: LSETRHEVQL NPPSPHPEPQ VHDDYVLEQE ASDYVNAVQI NDDLVDKYSL QEDQYQLQHE DYEDEVTVEE TPREEFVVDV VHEPRAAPPP EEPVGEQSKM
201: SYASILRVAK EAAAVPVAAT QPSYNRNSQE NYEWDQPLRT PSPQLAAPPA PAQQSNAFTD YGAEADGGFG FEDFEIKSVY VRNLPSNISA SEIEEEFKNF
301: GTIKPDGVFL RSRKDAIGVC YAFVEYEDMT SVENAIKASP IYLGGRQVYI EGRRPNPAGV RGARGRGRGR GGYPTEAPRG RFGSRGVSGR GNQEGGDYRP
401: RGNGNYRGGR

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.