CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86074
CDX93686
CDY24202
CDY43361
CDY44104
CDY59680
CDY64888
CDY71917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	CDX86074	AT1G48630.1	21798944
AT5G48650.1	CDX93686	AT1G48630.1	21798944
AT5G48650.1	CDY44104	AT1G48630.1	21798944
AT5G48650.1	CDY59680	AT1G48630.1	21798944
AT5G48650.1	CDY64888	AT1G48630.1	21798944
AT5G48650.1	CDY71917	AT1G48630.1	21798944
AT5G48650.1	CDY24202	AT3G13222.1	21798944
AT5G48650.1	CDY43361	AT3G13222.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86290	Canola	cytosol	90.09	85.31
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.5	63.32
KRH46640	Soybean	cytosol	38.79	38.96
Solyc09g059310.2.1	Tomato	extracellular, nucleus	39.01	38.19
KRG99633	Soybean	cytosol	38.36	37.4
CDX77365	Canola	cytosol	37.07	36.29
PGSC0003DMT400051956	Potato	cytosol	36.64	35.64
CDY00813	Canola	cytosol	36.64	35.42
Solyc06g083300.2.1	Tomato	nucleus	35.99	35.08
PGSC0003DMT400053195	Potato	cytosol	19.18	34.77
VIT_00s0216g00030.t01	Wine grape	cytosol	39.01	34.28
Solyc06g007780.2.1	Tomato	cytosol	34.7	33.68
PGSC0003DMT400071822	Potato	cytosol, plastid	33.41	32.29
CDY42844	Canola	cytosol	29.74	31.01
CDY23092	Canola	mitochondrion	30.39	29.94
CDY16827	Canola	cytosol	29.09	29.74
CDX98124	Canola	cytosol	25.65	29.68
CDY36405	Canola	cytosol	25.86	29.63
VIT_00s2623g00010.t01	Wine grape	cytosol	17.67	29.39
CDY02179	Canola	plastid	30.82	28.37
CDX94739	Canola	cytosol	24.35	27.56
CDY51206	Canola	cytosol	24.35	27.56
CDY22322	Canola	cytosol	24.14	27.45
CDY02983	Canola	cytosol	23.92	27.21
CDY13135	Canola	mitochondrion	26.94	27.06
CDY36616	Canola	cytosol	23.71	27.03
CDY36961	Canola	cytosol	27.16	26.75
CDY47006	Canola	cytosol	24.57	26.33
CDX87195	Canola	plastid	28.88	25.77
CDY50308	Canola	cytosol	22.2	24.64
CDY07356	Canola	cytosol	20.91	24.56
CDY54146	Canola	cytosol	22.84	24.15
CDY40904	Canola	nucleus	22.41	24.13
CDX95953	Canola	cytosol	23.06	22.86
CDY04271	Canola	cytosol	21.12	22.79
CDY04270	Canola	cytosol	20.47	22.78
CDY07355	Canola	cytosol	20.91	18.55

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078DDI1	EnsemblPlants:CDX85353	ProteinID:CDX85353
ProteinID:CDX85353.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00143025001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EEE68E	SEG:seg

Description

BnaC07g26640D

Coordinates

chrLK031841:+:1367246..1369492

Molecular Weight (calculated)

50198.3 Da

IEP (calculated)

5.825

GRAVY (calculated)

-0.559

Length

464 amino acids

Sequence
(BLAST)

001: MDPAQVPAPV VDPLVVGRAF VMQYYEILHK HPQHLHRFYH EISKVGRVGQ DGVMRDFYTL EGIREELDTL SFGDFESAKI TSYHTQESHS GGFIVLVTGW
101: FTLKDALKRK FTQTFFLAPQ ENGYYVLNDI LRFDNGPEAL DGDGSLTPFP VTAPTGGIQG SEQAALASVD SVCKEVSKDN ASVAKESILV PDSVNEEVPH
201: IEKTYNKVGG DSMKISDPEN VSKKSYASVV AKDKSGVSAG SSPSPKQIPK DQELQVISDV STEQKVKDQG HQVSSDLSPV EKSDAVFEAV DDTEYGYNQG
301: FEAVAEGTSI YVKHLPGNAT IDMLENEFKK FGAIGNGGVQ VISQKGFGYP FGFVEFKDAD AAQKAIEASP LMIGGQKAFV EEKRSTARGN RGRGYGNEYG
401: NRNVIGDGGN GYGIRNEGGR GGGGRYGHGN NYNRGRRGGG GGGGGRYFNR RGGYEYVVAS NNSY

Best Arabidopsis Sequence Match ( AT5G48650.1 )
(BLAST)

001: MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY
101: FTLNERSRRK FTQTFFLAPQ EKGFFVLNDI LRFVNDDAKD NVPETIDGEV VSGINSTTPT IINGMKGSEQ AACVSVNPVC KEVSKPLDNE NAKDNVLVPE
201: IANEVARTEI TCKEVADDSQ KNYDPDDGLA DAPKKSYASV LKVTKDKFGV PAVSLPSPKK IPKDQEHQAP SDPSTGQILK DQGQQASSDP SQVIESDTVS
301: ESVDASENGH NQEAVAEGTS IYVRHLPFNA NIDMLEAEFK QFGAITNGGI QVINQRGLGY PYGFVEFEEA DAAHRAIEAS PVKIGGLRAF VEEKLSTSRG
401: KRGNGNVGYG NRNVGVGMRG RGSYGYGYDY RRGGRGPGGG GRSFNRRGNE YVASINSY

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q84JH2]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.