CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86074
CDX93686
CDY24202
CDY43361
CDY44104
CDY59680
CDY64888
CDY71917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	CDX86074	AT1G48630.1	21798944
AT5G48650.1	CDX93686	AT1G48630.1	21798944
AT5G48650.1	CDY44104	AT1G48630.1	21798944
AT5G48650.1	CDY59680	AT1G48630.1	21798944
AT5G48650.1	CDY64888	AT1G48630.1	21798944
AT5G48650.1	CDY71917	AT1G48630.1	21798944
AT5G48650.1	CDY24202	AT3G13222.1	21798944
AT5G48650.1	CDY43361	AT3G13222.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037472.1-P	Field mustard	cytosol	95.51	95.51
CDX85353	Canola	cytosol	85.31	90.09
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.98	63.1
Solyc09g059310.2.1	Tomato	extracellular, nucleus	36.73	37.97
KRH46640	Soybean	cytosol	35.71	37.88
KRG99633	Soybean	cytosol	35.31	36.34
PGSC0003DMT400053195	Potato	cytosol	18.98	36.33
PGSC0003DMT400051956	Potato	cytosol	35.1	36.06
CDX77365	Canola	cytosol	34.49	35.65
Solyc06g083300.2.1	Tomato	nucleus	34.49	35.5
CDY00813	Canola	cytosol	34.29	35.0
Solyc06g007780.2.1	Tomato	cytosol	33.47	34.31
VIT_00s0216g00030.t01	Wine grape	cytosol	36.53	33.9
PGSC0003DMT400071822	Potato	cytosol, plastid	32.45	33.12
CDY42844	Canola	cytosol	28.37	31.24
CDX98124	Canola	cytosol	25.31	30.92
CDY23092	Canola	mitochondrion	29.39	30.57
CDY16827	Canola	cytosol	28.16	30.4
CDY36405	Canola	cytosol	25.1	30.37
VIT_00s2623g00010.t01	Wine grape	cytosol	16.73	29.39
CDY51206	Canola	cytosol	24.08	28.78
CDY02983	Canola	cytosol	23.88	28.68
CDY02179	Canola	plastid	29.39	28.57
CDY36616	Canola	cytosol	23.47	28.26
CDY47006	Canola	cytosol	24.29	27.48
CDY13135	Canola	mitochondrion	25.71	27.27
CDY22322	Canola	cytosol	22.65	27.21
CDX94739	Canola	cytosol	22.65	27.07
CDY36961	Canola	cytosol	25.92	26.96
CDX87195	Canola	plastid	27.96	26.35
CDY50308	Canola	cytosol	21.84	25.6
CDY07356	Canola	cytosol	20.2	25.06
CDY54146	Canola	cytosol	22.45	25.06
CDY40904	Canola	nucleus	21.84	24.83
CDY04270	Canola	cytosol	20.2	23.74
CDX95953	Canola	cytosol	22.45	23.5
CDY04271	Canola	cytosol	20.41	23.26
CDY07355	Canola	cytosol	20.2	18.93

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078DAL8	EnsemblPlants:CDX86290	ProteinID:CDX86290
ProteinID:CDX86290.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00144402001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EECF54	SEG:seg

Description

BnaA06g30070D

Coordinates

chrLK031845:-:784709..787571

Molecular Weight (calculated)

53036.6 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.555

Length

490 amino acids

Sequence
(BLAST)

001: MSSTVSQMRN VIAITMDPAA VAPVVDPPVV GRAFVMQYYE ILHKHPQHLH RFYHEISKVG RVGQDGVMRD FYTLDGIREE LDTLSFGNFV SAKITSYHTQ
101: ESHNGGFVVL VTGWFTLKDA LKRKFTQTFF LAPQENGYFV LNDILRFDNG PEALDGDGSL TPCPVAAPTG GIQGSEQSAC VSVDSVCKEV SKPLNSNNAS
201: VAKESIVVPD SVNEEVPHIE KNYKEVASDP MKVSDPDNEH GNVSKKKSYA SVVAKDKSGV SAGSSPSPKQ IPKDQEHQVT SDVSTEQKVQ DQGHLVSSDL
301: SPVEKYDAVF EAVDDTEYGH NQGFEAVAEG TSIYVKHLPG NATIDMLETE FKKFGAIGNG GVQVVSQKGF GYPFGFVEFK DADAAQKAIE ASPLMIGGQK
401: AFVEEKRSTA RVTGNRGYGS RNMEGSGGNE YGNRDVTGDG GNGYGIRNEG GRGGGGRYGH GNYYNRGRRG GGRSFNRRGG YEYVASNNSY

Best Arabidopsis Sequence Match ( AT5G48650.1 )
(BLAST)

001: MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY
101: FTLNERSRRK FTQTFFLAPQ EKGFFVLNDI LRFVNDDAKD NVPETIDGEV VSGINSTTPT IINGMKGSEQ AACVSVNPVC KEVSKPLDNE NAKDNVLVPE
201: IANEVARTEI TCKEVADDSQ KNYDPDDGLA DAPKKSYASV LKVTKDKFGV PAVSLPSPKK IPKDQEHQAP SDPSTGQILK DQGQQASSDP SQVIESDTVS
301: ESVDASENGH NQEAVAEGTS IYVRHLPFNA NIDMLEAEFK QFGAITNGGI QVINQRGLGY PYGFVEFEEA DAAHRAIEAS PVKIGGLRAF VEEKLSTSRG
401: KRGNGNVGYG NRNVGVGMRG RGSYGYGYDY RRGGRGPGGG GRSFNRRGNE YVASINSY

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q84JH2]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.