CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95953	Canola	cytosol	93.5	86.11
CDY04270	Canola	cytosol	59.86	61.87
CDY04271	Canola	cytosol	61.25	61.4
CDY50308	Canola	cytosol	58.93	60.77
CDY07356	Canola	cytosol	54.99	60.0
CDY54146	Canola	cytosol	58.47	57.4
AT1G69250.1	Thale cress	cytosol	50.81	51.29
CDY07355	Canola	cytosol	61.25	50.48
CDX98124	Canola	cytosol	30.39	32.67
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	29.93	31.31
CDY51206	Canola	cytosol	29.7	31.22
CDY36616	Canola	cytosol	29.47	31.2
CDY02983	Canola	cytosol	29.47	31.13
CDY36405	Canola	cytosol	29.23	31.11
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	32.25	29.89
CDY42844	Canola	cytosol	28.54	27.64
CDY16827	Canola	cytosol	29.0	27.53
CDY47006	Canola	cytosol	26.68	26.56
CDY23092	Canola	mitochondrion	27.84	25.48
CDX77365	Canola	cytosol	27.84	25.32
CDY00813	Canola	cytosol	27.84	25.0
CDY02179	Canola	plastid	28.31	24.21
CDX87195	Canola	plastid	28.31	23.46
CDX85353	Canola	cytosol	24.13	22.41
CDX86290	Canola	cytosol	24.83	21.84
Solyc05g012240.1.1	Tomato	cytosol	20.19	21.17
CDX94739	Canola	cytosol	19.03	20.0
CDY22322	Canola	cytosol	18.79	19.85
CDY13135	Canola	mitochondrion	21.11	19.7
CDY36961	Canola	cytosol	20.88	19.11
PGSC0003DMT400072921	Potato	cytosol	19.95	13.61
Solyc05g012230.2.1	Tomato	extracellular	6.5	6.81

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078HU64	UniProt:A0A078HU64	EnsemblPlants:CDY40904
ProteinID:CDY40904	ProteinID:CDY40904.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00071945001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EF0711	SEG:seg	:	:	:

Description

BnaC06g30420DBnaC06g30420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU64]

Coordinates

chrLK032484:+:21009..23286

Molecular Weight (calculated)

45857.8 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.558

Length

431 amino acids

Sequence
(BLAST)

001: MAAAEEGAPS HEEISEAFVY QYYHIMVNAT DEAYRLYVDG SVITRPGGPH GTMLSFTSLQ AIKEHYLACE YKGTTYDVLS VDSQRSLQDG ILIMVVGFLT
101: GKDNLKRKFS QTFYLAPQDK AYVVVNDMYR FVDEESSLPP TVESVPEAQV AKPVDEVSKT EPVQKVIDAP AKKKSVNAAE ATPPVTSQKP KEPIAETAAD
201: GAKKSYAAMV QSLSRNAAPF QAKAAPVQKP RSMAPPPKAR AAAPAPAAVG KPEKKSDQRI VDVDEPGTSV FVSNLPMDAR APQLYELFKG FGPIKEGGVQ
301: IRSSRASGRC FGFVSFESVA SVQSMLKAAK SNPFKLGEHK LLEYDGSKPS SGGRSGGGSS KAQNGSVDES KTPTGSVDES KTPSGSADGS KSENGSAAGG
401: EDDDGFKTIT SRRNRRGNGD KKNSGTPKVK A

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.