CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13135	Canola	mitochondrion	92.36	94.16
CDX94739	Canola	cytosol	72.61	83.41
AT5G43960.1	Thale cress	cytosol	77.92	81.56
CDY22322	Canola	cytosol	70.28	81.13
KRH67452	Soybean	cytosol	48.41	50.44
KRG95733	Soybean	cytosol	47.35	49.56
VIT_07s0005g04300.t01	Wine grape	cytosol	47.98	48.6
Solyc06g083730.2.1	Tomato	nucleus	46.28	47.91
PGSC0003DMT400051923	Potato	cytosol	46.5	47.3
CDY42844	Canola	cytosol	29.3	31.01
CDY16827	Canola	cytosol	28.66	29.74
CDY23092	Canola	mitochondrion	28.24	28.24
CDX77365	Canola	cytosol	27.81	27.64
CDX85353	Canola	cytosol	26.75	27.16
CDY00813	Canola	cytosol	27.6	27.08
CDY47006	Canola	cytosol	24.42	26.56
CDY02179	Canola	plastid	28.24	26.39
CDX86290	Canola	cytosol	26.96	25.92
CDY51206	Canola	cytosol	22.51	25.85
CDX87195	Canola	plastid	28.45	25.77
CDX98124	Canola	cytosol	21.87	25.69
CDY36616	Canola	cytosol	22.08	25.55
CDY02983	Canola	cytosol	21.66	25.0
CDY36405	Canola	cytosol	21.23	24.69
CDY07356	Canola	cytosol	17.83	21.27
CDY50308	Canola	cytosol	18.68	21.05
CDY40904	Canola	nucleus	19.11	20.88
CDY54146	Canola	cytosol	19.32	20.73
CDY04271	Canola	cytosol	18.47	20.23
CDY04270	Canola	cytosol	17.62	19.9
CDX95953	Canola	cytosol	19.11	19.23
CDY07355	Canola	cytosol	18.47	16.63

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078HGS6	UniProt:A0A078HGS6	EnsemblPlants:CDY36961
ProteinID:CDY36961	ProteinID:CDY36961.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00063107001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EE79B4	SEG:seg	:	:	:

Description

BnaC09g17770DBnaC09g17770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGS6]

Coordinates

chrLK032388:-:55998..59204

Molecular Weight (calculated)

53069.6 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.740

Length

471 amino acids

Sequence
(BLAST)

001: MHTNSQNQKK KLKYLNSVME VGIYQYESKT YGGEIKEREK YKVGSYFVGQ YYQVLQQQPD LIHQFYSDTS KAIRVDGDSS ETADTLLNIH NMVMSLNFTA
101: IEVKTINSVE SWEGGVLVAV SGSVKTKEFS NRRSFMQTFF LAPQEKGYFV LNDIFQFIVS YHQPSYLSET NRDEAQLNPP NPHPEEPQVP DYVLEQEARD
201: YVDAVQIKDD PVDKYSLQED QHHEDYEDEV EEVEETPREE VVVDVVHESR AAPPEEPPAG EKSKMSYASI LRVAKEAAAA PVVSTQPSHN RNSQEIKEWD
301: QPLMTPSPQV AAPLAPAQQP YVTDYGAEAE DGFGFEDFEM KSVYVRNLPS DISASEIEEE FKNFGTIKPD GVFLRTRKDV VGVCYAFVEF EDMTSVENAI
401: KASPIYLGGR HVYIEGRRPN PAGVRGARRG GRGRGGYPTE APRGRFGSSR GNRDGGGDYR ARGNGYNRVG R

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.