CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015105.1-P	Field mustard	cytosol	95.57	97.63
CDY00813	Canola	cytosol	96.62	95.42
AT3G25150.2	Thale cress	plastid	81.86	66.1
KRH46640	Soybean	cytosol	47.05	48.27
KRG99633	Soybean	cytosol	48.1	47.9
Solyc09g059310.2.1	Tomato	extracellular, nucleus	47.26	47.26
Solyc06g083300.2.1	Tomato	nucleus	46.84	46.64
VIT_00s0216g00030.t01	Wine grape	cytosol	51.27	46.02
PGSC0003DMT400051956	Potato	cytosol	46.2	45.91
PGSC0003DMT400053195	Potato	cytosol	24.47	45.31
Solyc06g007780.2.1	Tomato	cytosol	42.41	42.05
PGSC0003DMT400071822	Potato	cytosol, plastid	40.3	39.79
CDY42844	Canola	cytosol	36.5	38.88
VIT_00s2623g00010.t01	Wine grape	cytosol	22.57	38.35
CDX85353	Canola	cytosol	36.29	37.07
CDY16827	Canola	cytosol	35.02	36.56
CDY23092	Canola	mitochondrion	35.23	35.46
CDX86290	Canola	cytosol	35.65	34.49
CDY02179	Canola	plastid	35.23	33.13
CDX98124	Canola	cytosol	27.85	32.92
CDY36405	Canola	cytosol	27.64	32.35
CDY47006	Canola	cytosol	29.54	32.33
CDX87195	Canola	plastid	35.44	32.31
CDY02983	Canola	cytosol	25.74	29.9
CDY51206	Canola	cytosol	25.53	29.51
CDX94739	Canola	cytosol	25.32	29.27
CDY36616	Canola	cytosol	25.11	29.24
CDY22322	Canola	cytosol	24.89	28.92
CDY50308	Canola	cytosol	25.32	28.71
CDY13135	Canola	mitochondrion	27.22	27.92
CDY07356	Canola	cytosol	23.21	27.85
CDY40904	Canola	nucleus	25.32	27.84
CDY36961	Canola	cytosol	27.64	27.81
CDY54146	Canola	cytosol	25.11	27.11
CDY04270	Canola	cytosol	23.21	26.38
CDY04271	Canola	cytosol	23.63	26.05
CDX95953	Canola	cytosol	24.05	24.36
CDY07355	Canola	cytosol	24.05	21.8

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078CKC1	EnsemblPlants:CDX77365	ProteinID:CDX77365
ProteinID:CDX77365.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00128186001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EECDAA	SEG:seg

Description

BnaA07g05030D

Coordinates

chrLK031811:+:5192..7880

Molecular Weight (calculated)

51400.1 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.530

Length

474 amino acids

Sequence
(BLAST)

001: MDFVCFQEES KAMAMLAQTP PCTPDIVGNT FVHQYYHILH QSPQHVHRFY QEISKLGRPE DNGTMSITST LQAIDKKILA LGSGVLSAEI ATVDTQESYG
101: GGFLLLVTGY LTGTDGVRRT FTQTFFLARQ ETGYFVLNDM FRYIDDATTV RGTQIPVNNI QVPVNVHQDP HAAQDIPEDF VQEKYVQENH AVEQSKSINV
201: PEVFTPTEEE QVSVAEDAPA PGIVHEAPHD VHKVGESDSS RAGEVPKRSY ASIVMVMKEN AAPMSASRTP TKVVEPKRQE DQATHVPLPT PLSEKSDSRA
301: NVAVNGNDQD NERAPGPSIY LKGLPLDATP ALLENEFQKF GPIRTNGIQV RSQKGFCFGF VEFESASSMQ SAIEASPIIL RNHRGRSAFG VGTGYRNEGG
401: RGRGSFRGGR GGGYGRNDFN GYGNNRGNNR GGYANRANGD GGGFPRRVRR GAGGGIDANG ATKPVDAPPV SITA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.