Factsheet for VIT_00s2623g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g02750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	VIT_17s0000g02750.t01	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0216g00030.t01	Wine grape	cytosol	92.47	48.86
PGSC0003DMT400053195	Potato	cytosol	44.44	48.44
Solyc06g083300.2.1	Tomato	nucleus	48.03	28.15
PGSC0003DMT400051956	Potato	cytosol	47.67	27.88
Solyc09g059310.2.1	Tomato	extracellular, nucleus	46.95	27.64
Solyc06g007780.2.1	Tomato	cytosol	44.8	26.15
KRH46640	Soybean	cytosol	42.65	25.76
KRG99633	Soybean	cytosol	43.01	25.21
CDX77365	Canola	cytosol	38.35	22.57
Bra015105.1-P	Field mustard	cytosol	36.92	22.2
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	39.07	21.8
CDY00813	Canola	cytosol	37.28	21.67
VIT_01s0011g00400.t01	Wine grape	cytosol	35.48	20.45
PGSC0003DMT400071822	Potato	cytosol, plastid	35.13	20.42
AT3G25150.2	Thale cress	plastid	41.58	19.76
CDX85353	Canola	cytosol	29.39	17.67
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	28.32	17.25
VIT_14s0068g00310.t01	Wine grape	cytosol	32.26	17.01
CDX86290	Canola	cytosol	29.39	16.73
Bra037472.1-P	Field mustard	cytosol	29.03	16.53
VIT_05s0049g01940.t01	Wine grape	cytosol	27.24	16.0
VIT_07s0005g04300.t01	Wine grape	cytosol	23.66	14.19
AT3G07250.1	Thale cress	nucleus	18.64	7.68

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	ProteinID:CCB48502	ProteinID:CCB48502.1	UniProt:F6H8F9	EMBL:FN595466
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0030529	InterPro:IPR018222
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	PFAM:PF02136	PFscan:PS50177	PANTHER:PTHR10693
SUPFAM:SSF54427	UniParc:UPI000210816C	ArrayExpress:VIT_00s2623g00010	EnsemblPlantsGene:VIT_00s2623g00010	EnsemblPlants:VIT_00s2623g00010.t01	SEG:seg

Description

No Description!

Coordinates

chrUn:+:42527208..42528778

Molecular Weight (calculated)

31006.8 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.343

Length

279 amino acids

Sequence
(BLAST)

001: MVVGKVCVVY KYPEKTLMFP LADPRQQRPV QTLALGKGRS EKQGFCHLTP PPQQPSQGLS LYIVLLGVIS GFKEIHRSEM AQQAPAGSTH AAQVVGNAFV
101: HQYYHILHQS PELVFRFYQD ISKLGRLEEN GIMGVTTTME AINEKILSLN YGDLIAEIKS VDAQESFGGG VLVLVTGYLT GKDNRSRDFT QSFFLAPQDK
201: GYFVLNDLFR YIEDVKYQDG NPGLVSEVEA PLTPEQDPSP VQENHILEPT PEVPEEVNEE VYNPSENGEA SVEKRSTSC

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.