Factsheet for AT3G07250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46640	Soybean	cytosol	18.32	26.84
KRG99633	Soybean	cytosol	18.17	25.84
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.13	25.33
Solyc09g059310.2.1	Tomato	extracellular, nucleus	17.43	24.89
Solyc06g083300.2.1	Tomato	nucleus	17.28	24.58
PGSC0003DMT400051956	Potato	cytosol	17.28	24.53
Solyc06g007780.2.1	Tomato	cytosol	17.13	24.27
PGSC0003DMT400053195	Potato	cytosol	9.16	24.22
AT5G43960.1	Thale cress	cytosol	15.36	23.11
PGSC0003DMT400071822	Potato	cytosol, plastid	15.8	22.29
AT5G60980.3	Thale cress	cytosol	15.07	22.17
AT2G03640.4	Thale cress	nucleus	14.77	22.08
VIT_00s0216g00030.t01	Wine grape	cytosol	16.99	21.78
AT1G13730.1	Thale cress	cytosol	12.7	20.09
AT3G25150.2	Thale cress	plastid	16.99	19.59
VIT_00s2623g00010.t01	Wine grape	cytosol	7.68	18.64
AT3G55540.1	Thale cress	cytosol	9.16	18.56
AT1G69250.1	Thale cress	cytosol	11.67	18.5

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:819913	ProteinID:AEE74518.2	ArrayExpress:AT3G07250
EnsemblPlantsGene:AT3G07250	RefSeq:AT3G07250	TAIR:AT3G07250	RefSeq:AT3G07250-TAIR-G	EnsemblPlants:AT3G07250.1	TAIR:AT3G07250.1
ncoils:Coil	UniProt:F4JED3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0009506	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	RefSeq:NP_001319490.1
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PO:PO:0007611	PO:PO:0009025	PO:PO:0009046	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF20	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI0008490526	SEG:seg	:	:	:	:

Description

RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein [Source:UniProtKB/TrEMBL;Acc:F4JED3]

Coordinates

chr3:-:2303075..2306615

Molecular Weight (calculated)

76990.3 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.750

Length

677 amino acids

Sequence
(BLAST)

001: MDPRPNTAKV GDEFARQYYN TLQNAPENLY KLYKDKSTIS RPGLDGTMRV FTLSKDLKWR SPGSFDSVKI TSVTSQDSLK QGILVVVYGY LTFNERPARH
101: FTQVFFLVPQ EKGYIVCTDM FRFVDIPEAN AAIPPANDVI EEKVPETEGA ALRVSEPNHG FDNVPKLSCA SEGAAICAKK LPLDATIAFV ENAFKQFGEI
201: RRGGVEVRIN WHCTGKYAYV EFEEAEAANR AIMASPISID GYRTYVEKKY AYNKSADTGN GNSQDSQAIT EDAHIRVKDL PPNATVALVE SVFKQFGPIK
301: KGRIRVINPA NSNYWYAFVE FEEADAAKRA IQASPLNVDG HTTYVEQKQP YYEGYYESPS DGPGNIKRGE GVRGSLGNPI CNWQKMEEVR GTDVYDLQNW
401: QKIMNQSEEQ MKFQEEEGRQ YNQNRYTSEE VRGTEGVGLE EEEEEEENQN WEEQRKIQEE EGTESHEASV FLKRLPLDVT FALIEDALKK FGPINAISII
501: KSGPLYKFAF VDFEKADVAN RAIMASPVRI CEKNVNVQKK LSAGAGKRYT RPTCRDTSVP LGAESGHREQ GSQNRYGSEQ VRGTEAFDFW DWQWQKSKEE
601: QSKLQEEEGE IQVDHSWEEE HSKVLEEESK LQEEAVETQV DHSWDYEQIM EEQEEEESKQ NQTSYIEDIA AFFSGVL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.