Factsheet for AT1G13730.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36405	Canola	cytosol	72.66	76.79
Bra019707.1-P	Field mustard	cytosol	71.96	76.62
CDX98124	Canola	cytosol	71.5	76.31
AT2G03640.4	Thale cress	nucleus	59.35	56.07
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	35.98	37.38
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	37.15	34.19
AT1G69250.1	Thale cress	cytosol	32.71	32.79
AT5G60980.3	Thale cress	cytosol	32.01	29.78
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.87	25.11
AT5G43960.1	Thale cress	cytosol	25.7	24.44
AT3G25150.2	Thale cress	plastid	32.01	23.34
Solyc05g012240.1.1	Tomato	cytosol	21.26	22.14
AT3G55540.1	Thale cress	cytosol	16.82	21.56
PGSC0003DMT400072921	Potato	cytosol	21.26	14.4
AT3G07250.1	Thale cress	nucleus	20.09	12.7
Solyc05g012230.2.1	Tomato	extracellular	5.14	5.35

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:837933	UniProt:A0A178WJP0	ProteinID:AAF81299.1
ProteinID:AEE29061.1	ProteinID:ANM61007.1	ArrayExpress:AT1G13730	EnsemblPlantsGene:AT1G13730	RefSeq:AT1G13730	TAIR:AT1G13730
RefSeq:AT1G13730-TAIR-G	EnsemblPlants:AT1G13730.1	TAIR:AT1G13730.1	EMBL:AY058169	EMBL:AY140039	Unigene:At.15556
EMBL:BT006581	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0030529
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	RefSeq:NP_001323252.1	RefSeq:NP_563932.1	InterPro:NTF2
InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAP17673.1	PFAM:PF00076	PFAM:PF02136
PO:PO:0000013	PO:PO:0000037	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007098	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009052
PO:PO:0020038	PO:PO:0020100	PO:PO:0025022	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF41	UniProt:Q9LMX6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI00000A7D59	SEG:seg	:	:	:

Description

At1g13730 [Source:UniProtKB/TrEMBL;Acc:Q9LMX6]

Coordinates

chr1:+:4709757..4712672

Molecular Weight (calculated)

46805.7 Da

IEP (calculated)

7.763

GRAVY (calculated)

-0.659

Length

428 amino acids

Sequence
(BLAST)

001: MALESNAPVV DPNTIGNSFV EKYYNLLYKS PSQVHQFYLD DSVLGRPGSD GEMVSVKSLK AINEQIMSFD YEISKIQILT ADSQASYMNG VVTLVTGLLT
101: VKEGQRMRFS QSFFLVPLNG SYFVLNDVFR YVADEIVEPE ANKKEVEEVI PQVVQPTEQV DEVAEPVTIP TQQPEAKQTT ENTVKKPERA VANGHPKTQE
201: DNVVNDKSNG VDAPKKSFAH IVQDLAQNGA TFNAKASPAK PKSKPVTKPS AARESKAPAP VSEHSSAATI DQQAEGYTIF VANLLMDATP EQLNETFKGF
301: GAITKDGIQV RSYRLKGNCF GFVTFASAEA VKLVLQAHKE SAIRIGNRRV SIEEKRGNND NGRPAMRNGG YRNDNGYRND GYRPRGNGSN GGRGYGRNGS
401: ERRGESRNGE AHNGDGKVHQ NGTVEASR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.