CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85353
CDX86290
CDX97535
CDY33258
CDY39087
CDY65326

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13730.1	CDX97535	AT3G13990.1	21798944
AT1G13730.1	CDY33258	AT3G13990.1	21798944
AT1G13730.1	CDY39087	AT3G13990.1	21798944
AT1G13730.1	CDY65326	AT3G13990.1	21798944
AT1G13730.1	CDX85353	AT5G48650.1	21798944
AT1G13730.1	CDX86290	AT5G48650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98124	Canola	cytosol	86.67	87.53
AT1G13730.1	Thale cress	cytosol	76.79	72.66
CDY51206	Canola	cytosol	60.99	60.24
CDY02983	Canola	cytosol	60.25	59.8
CDY36616	Canola	cytosol	59.75	59.46
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	37.78	37.14
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	39.01	33.98
CDY50308	Canola	cytosol	34.32	33.25
CDY54146	Canola	cytosol	34.81	32.12
CDY42844	Canola	cytosol	34.57	31.46
CDY16827	Canola	cytosol	34.07	30.4
CDY07356	Canola	cytosol	29.63	30.38
CDY04271	Canola	cytosol	31.85	30.0
CDY04270	Canola	cytosol	30.62	29.74
CDY23092	Canola	mitochondrion	34.57	29.72
CDY40904	Canola	nucleus	31.11	29.23
CDY47006	Canola	cytosol	30.86	28.87
CDY02179	Canola	plastid	34.81	27.98
CDX77365	Canola	cytosol	32.35	27.64
CDY00813	Canola	cytosol	31.85	26.88
CDX95953	Canola	cytosol	30.86	26.71
CDX87195	Canola	plastid	34.07	26.54
CDX85353	Canola	cytosol	29.63	25.86
CDY07355	Canola	cytosol	32.59	25.24
CDX86290	Canola	cytosol	30.37	25.1
CDY13135	Canola	mitochondrion	24.69	21.64
CDY22322	Canola	cytosol	21.73	21.57
CDX94739	Canola	cytosol	21.73	21.46
CDY36961	Canola	cytosol	24.69	21.23
Solyc05g012240.1.1	Tomato	cytosol	21.48	21.17
PGSC0003DMT400072921	Potato	cytosol	22.47	14.4
Solyc05g012230.2.1	Tomato	extracellular	6.42	6.33

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078HDF9	UniProt:A0A078HDF9	EnsemblPlants:CDY36405
ProteinID:CDY36405	ProteinID:CDY36405.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00062018001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EDD397	SEG:seg	:	:	:

Description

BnaC05g10060DBnaC05g10060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDF9]

Coordinates

chrLK032375:+:140562..142239

Molecular Weight (calculated)

44228.8 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.533

Length

405 amino acids

Sequence
(BLAST)

001: MALESNAPLA DPHIVGNAFV KKYYTHLYES PSQVHRFYLE DSVLGRPGSD GEMVSVNSLK AINEQIMSFD YENSKIQILT ADSQASYMSG VVTLVTGLLT
101: VNDGERMRFS QSFFLVPQKG SYFVLNDVFR YVSDELFVEP EANKKEVEEE VTPQAVQTTT DTIISITMSN GHPITEEEKV VNDIICNGVD APKKSFAVIV
201: QSPAKVGAAF NVKASTAKPK PVKKLSAALE SKAPAPVSQI DNQSAEGGSI FVANLPMDAT PEQLNETFKG FGAIKNDAIQ VRSYRLKRNC FGFVTFESAE
301: AVKLVLQAHK ESAIRIGNRR VSIEEKRGNN ENGRSSTRNG GYRSENGYRN DGFRPRGNGF NGGGRGHGGN GYERRGESRN AEANNNGDGS RAYQNGLVKS
401: SRARG

Best Arabidopsis Sequence Match ( AT1G13730.1 )
(BLAST)

001: MALESNAPVV DPNTIGNSFV EKYYNLLYKS PSQVHQFYLD DSVLGRPGSD GEMVSVKSLK AINEQIMSFD YEISKIQILT ADSQASYMNG VVTLVTGLLT
101: VKEGQRMRFS QSFFLVPLNG SYFVLNDVFR YVADEIVEPE ANKKEVEEVI PQVVQPTEQV DEVAEPVTIP TQQPEAKQTT ENTVKKPERA VANGHPKTQE
201: DNVVNDKSNG VDAPKKSFAH IVQDLAQNGA TFNAKASPAK PKSKPVTKPS AARESKAPAP VSEHSSAATI DQQAEGYTIF VANLLMDATP EQLNETFKGF
301: GAITKDGIQV RSYRLKGNCF GFVTFASAEA VKLVLQAHKE SAIRIGNRRV SIEEKRGNND NGRPAMRNGG YRNDNGYRND GYRPRGNGSN GGRGYGRNGS
401: ERRGESRNGE AHNGDGKVHQ NGTVEASR

Arabidopsis Description

At1g13730 [Source:UniProtKB/TrEMBL;Acc:Q9LMX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.