CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035946.1-P	Field mustard	cytosol	83.85	96.04
CDY16827	Canola	cytosol	83.85	96.04
AT5G60980.3	Thale cress	cytosol	74.62	84.35
CDY42844	Canola	cytosol	70.77	82.7
CDY23092	Canola	mitochondrion	73.85	81.53
CDY02179	Canola	plastid	78.27	80.75
CDY47006	Canola	cytosol	56.35	67.67
KRH03143	Soybean	cytosol, nucleus	44.81	50.65
KRH56802	Soybean	cytosol, nucleus	44.81	50.43
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	44.04	45.8
GSMUA_Achr4P00640_001	Banana	cytosol	30.58	41.09
TraesCS7B01G322100.1	Wheat	cytosol	12.12	39.62
TraesCS7D01G414000.1	Wheat	cytosol	12.12	39.62
TraesCS7A01G421800.1	Wheat	cytosol	11.92	38.75
CDX77365	Canola	cytosol	32.31	35.44
CDY00813	Canola	cytosol	32.5	35.21
CDX98124	Canola	cytosol	26.92	34.91
CDY36405	Canola	cytosol	26.54	34.07
CDY51206	Canola	cytosol	25.38	32.2
CDY36616	Canola	cytosol	24.62	31.45
CDY02983	Canola	cytosol	24.42	31.13
CDY50308	Canola	cytosol	24.42	30.38
CDX94739	Canola	cytosol	23.46	29.76
CDY22322	Canola	cytosol	23.27	29.66
Os03t0418800-01	Rice	mitochondrion	29.81	29.64
CDY54146	Canola	cytosol	25.0	29.61
CDY13135	Canola	mitochondrion	25.77	29.0
CDX85353	Canola	cytosol	25.77	28.88
KXG39124	Sorghum	cytosol	8.85	28.75
CDY36961	Canola	cytosol	25.77	28.45
TraesCS3B01G431000.2	Wheat	cytosol	29.81	28.34
CDY40904	Canola	nucleus	23.46	28.31
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	29.62	28.26
TraesCS3A01G398600.1	Wheat	cytosol	29.62	28.1
CDY07356	Canola	cytosol	21.35	28.1
CDX86290	Canola	cytosol	26.35	27.96
HORVU3Hr1G089630.1	Barley	cytosol	29.04	27.81
CDY04270	Canola	cytosol	22.12	27.58
HORVU0Hr1G007150.3	Barley	cytosol	14.62	27.24
Os07t0603100-01	Rice	extracellular	29.62	27.07
Zm00001d047289_P003	Maize	plasma membrane	30.38	27.05
CDY04271	Canola	cytosol	21.73	26.28
CDX95953	Canola	cytosol	23.27	25.85
EER94684	Sorghum	cytosol	29.81	25.0
TraesCS2B01G202200.1	Wheat	cytosol	29.62	24.56
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	29.42	24.56
TraesCS2D01G183500.1	Wheat	cytosol	29.62	24.44
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	29.04	23.97
Zm00001d022071_P002	Maize	cytosol	26.35	23.38
CDY07355	Canola	cytosol	22.12	21.99
GSMUA_Achr1P24520_001	Banana	nucleus	37.69	19.84
OQU90215	Sorghum	cytosol	28.08	18.86

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078DDA0	EnsemblPlants:CDX87195	ProteinID:CDX87195
ProteinID:CDX87195.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00146121001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EEB8F5
SEG:seg	:	:	:	:	:

Description

BnaC09g05100D

Coordinates

chrLK031849:+:1117084..1120098

Molecular Weight (calculated)

56020.5 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.517

Length

520 amino acids

Sequence
(BLAST)

001: MSRANVQSFG PKSHKLKSPV KVTHLCSLSH SLSTSVAVSL VLPLFLLQQQ ISLCPLSPPQ ITMAQQEAST SPGAEVVGRA FVEQYYHILH QSPGLVHRFY
101: QDSSLLTRPD LTGSVTTVTT MQAINDKIMP LNYEDYTAEI DTADAQESHE RGVIVLVTGR LTGKDNVRKK FSQTFFLAPQ DKGYFVLNDV FRFLEEKEVV
201: TTQARSVTIK DVQAPVEPES VVVSHEAEVE VEPEPVATIE EEDIENVAEV YDDPCEKDEG VVVDVEPIEP PAQIIHSEIL SVSNGDPPTY ASILKLMKSS
301: PAPPTHVARN KPRAAAPVRT NQKPAPPPAE TALPPNASSG LENDHNSSNV DVEDDGHSIY VRNLPFDTTP TQLEEVFKSF GDVKHEGIQV RSNKQQGFCF
401: GFVEFETSSG KQSALEASPI TIGDRQVVLE EKKTNSRGGN NGGGRGRYFG GRGSFRNESF KGGRGGGVGG GGRGWYGRGE FSGRPNPRNG GEGYQRVPQN
501: GGGGRGGGGR GGPRGGGVSS

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.