CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56802	Soybean	cytosol, nucleus	96.74	96.32
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	60.65	55.8
AT5G60980.3	Thale cress	cytosol	52.83	52.83
CDY42844	Canola	cytosol	50.43	52.13
Bra012989.1-P	Field mustard	cytosol	50.87	52.0
Bra029343.1-P	Field mustard	cytosol	50.43	51.67
Bra035946.1-P	Field mustard	cytosol	50.87	51.54
CDY16827	Canola	cytosol	50.87	51.54
KRH45051	Soybean	cytosol	50.87	50.65
CDY23092	Canola	mitochondrion	49.78	48.62
KRH01288	Soybean	cytosol	48.26	46.64
CDY02179	Canola	plastid	50.87	46.43
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	41.3	46.12
GSMUA_Achr4P00640_001	Banana	cytosol	38.7	45.99
CDX87195	Canola	plastid	50.65	44.81
CDY47006	Canola	cytosol	42.17	44.8
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	43.7	43.23
TraesCS7D01G414000.1	Wheat	cytosol	14.35	41.51
TraesCS7B01G322100.1	Wheat	cytosol	14.35	41.51
KRH46640	Soybean	cytosol	41.52	41.34
KRG99633	Soybean	cytosol	42.39	40.97
TraesCS7A01G421800.1	Wheat	cytosol	13.91	40.0
KRH57274	Soybean	cytosol, mitochondrion	17.39	37.21
KRH67452	Soybean	cytosol	32.61	33.19
Os03t0418800-01	Rice	mitochondrion	37.61	33.08
KRG95733	Soybean	cytosol	31.52	32.22
KXG39124	Sorghum	cytosol	11.09	31.88
HORVU0Hr1G007150.3	Barley	cytosol	18.48	30.47
KRG92252	Soybean	cytosol	31.09	30.43
KRG90305	Soybean	cytosol	31.09	30.17
KRH33563	Soybean	cytosol	30.65	29.94
HORVU3Hr1G089630.1	Barley	cytosol	34.78	29.47
TraesCS3A01G398600.1	Wheat	cytosol	35.0	29.38
TraesCS3B01G431000.2	Wheat	cytosol	34.78	29.25
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	34.57	29.17
Os07t0603100-01	Rice	extracellular	35.43	28.65
Zm00001d047289_P003	Maize	plasma membrane	35.65	28.08
EER94684	Sorghum	cytosol	35.0	25.97
Zm00001d022071_P002	Maize	cytosol	32.83	25.77
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	32.39	23.92
TraesCS2B01G202200.1	Wheat	cytosol	32.39	23.76
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	32.39	23.65
TraesCS2D01G183500.1	Wheat	cytosol	32.39	23.65
GSMUA_Achr1P24520_001	Banana	nucleus	44.78	20.85
OQU90215	Sorghum	cytosol	34.13	20.28

Protein Annotations

EntrezGene:100801253	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02010335	EnsemblPlantsGene:GLYMA_17G079200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0030529	UniProt:I1MT77	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KRH03143
ProteinID:KRH03143	ProteinID:KRH03143.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000233F07A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:6152994..6159220

Molecular Weight (calculated)

50116.7 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.635

Length

460 amino acids

Sequence
(BLAST)

001: MAMPETIPPT TPSAQVVGNA FVEQYYHILH QSPELVHRFY QDSSFLTRSD SNGVMTTVTT VQEIHEKIIS LKYEDYTAEI KTADAQESHK GGVIVLVTGC
101: LTGKDNVRRK FSQTFFLAPQ EKGYYVLNDV FRFIEENDTP QINSSSVSVI NENAEAVHEP ESEDLHAPKH LVEDNATLAE GENLNNGAEV YHPQDEEEGS
201: VIDEEVAEPP TDLSQNDIVT VDDSTSAVLD DAPRRSYAAI VMKSHVASGH VYVPSRAARI ASAKSSEQWP TTAKSTPVPE ALAPSSDSAP GSSDVHEEAE
301: GHSIYIRNLP FNATVEQLEE VFKKFGPIKH GGIQVRSSKH GFCFGFVEFE ELSSMHSALE ASPITVGERQ AVVEEKRTTT RVSGSGRGRH SGRGSFRSDS
401: FRARGKFGGG RGYGRNEFRN QGEFSGQPRS SQRPNQNGGG RGGGRQGVGN RNSTPSASTA

Best Arabidopsis Sequence Match ( AT5G60980.4 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.