Factsheet for TraesCS2A01G176100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G183500.1	Wheat	cytosol	96.83	96.83
TraesCS2B01G202200.1	Wheat	cytosol	95.56	96.01
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	86.19	87.16
TraesCS7A01G421800.1	Wheat	cytosol	15.56	61.25
Os07t0603100-01	Rice	extracellular	52.06	57.65
Zm00001d022071_P002	Maize	cytosol	39.52	42.49
GSMUA_Achr4P00640_001	Banana	cytosol	24.29	39.53
TraesCS3A01G398600.1	Wheat	cytosol	33.49	38.5
Solyc10g083060.1.1	Tomato	cytosol	5.08	38.1
KRH45051	Soybean	cytosol	25.71	35.06
KRH01288	Soybean	cytosol	25.71	34.03
CDY42844	Canola	cytosol	23.81	33.71
AT5G60980.3	Thale cress	cytosol	24.6	33.7
Bra012989.1-P	Field mustard	cytosol	23.97	33.56
Bra029343.1-P	Field mustard	cytosol	23.81	33.41
CDY16827	Canola	cytosol	23.81	33.04
Bra035946.1-P	Field mustard	cytosol	23.81	33.04
KRH56802	Soybean	cytosol, nucleus	24.13	32.9
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	26.03	32.8
Solyc02g088920.2.1	Tomato	cytosol	20.48	32.66
KRH03143	Soybean	cytosol, nucleus	23.65	32.39
VIT_01s0011g00400.t01	Wine grape	cytosol	24.44	31.82
TraesCS2A01G278000.1	Wheat	nucleus	24.76	31.77
OQU90215	Sorghum	cytosol	38.73	31.52
CDY23092	Canola	mitochondrion	23.49	31.42
Solyc02g030530.1.1	Tomato	cytosol	13.81	30.53
Solyc02g066830.2.1	Tomato	cytosol	19.21	30.33
CDY02179	Canola	plastid	23.97	29.96
CDX87195	Canola	plastid	23.97	29.04
VIT_14s0068g00310.t01	Wine grape	cytosol	24.29	28.92
CDY47006	Canola	cytosol	19.68	28.64
PGSC0003DMT400003713	Potato	cytosol	21.43	27.33
Solyc02g032790.1.1	Tomato	cytosol	12.7	26.49
KRH57274	Soybean	cytosol, mitochondrion	8.41	24.65
TraesCS7A01G281900.1	Wheat	nucleus	15.71	22.76
Solyc02g030490.1.1	Tomato	cytosol	8.57	21.95
TraesCS2A01G366900.1	Wheat	nucleus	13.81	19.38
GSMUA_Achr1P24520_001	Banana	nucleus	28.25	18.02

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS2A01G176100	EnsemblPlants:TraesCS2A01G176100.1	TIGR:cd00590	TIGR:cd00780	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:135203486..135207180

Molecular Weight (calculated)

69849.4 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.895

Length

630 amino acids

Sequence
(BLAST)

001: MSTPTGNFVR PFHPDVIGNA FAQQYYRVLS SSPEHVHKFY HDESILGRPD SDGPLTSITT TYAINQHFLS TDMKGCLIQL DNVDTQPSHG GGVLILVIGS
101: LTMLDTVKHR FVQSFFLAPQ ENGGYFVLND VLRAVPEMPL AETNEALVDH VDGNTQIAPF PAEPETSVNE SMDPELPSAG NISTNGEVIN PSAETIPVDA
201: EVINPSAENI SISDEVVEPS VESISSKEKV INSFGNENSQ IKNDAIKIPE VAPTPASAQK DVIKKTYASI VKATNESIPP APITKPKPKP KPRPNPTVKR
301: AENVEKSSSV PAKTMHAAVT VPPNDQNISD DQGYSIFVKN LPWNATIEMV EAEFSKFGSI KPRGIQVVHR QIDRFCFGFV EFESEKSMNA AIEAFKVRFG
401: SYVSYVEEKR TPKRVVNGVT HSEYNGNARG SRVLPDRGGY HCDNFRGQGA GFVNNGNYRD GDNFRGQGPS FGNNNNYRDG ENFRERGAGF VNNGNNYRDG
501: NNMRNDNRNQ NEYSGHGRGP QGNDYRQNDS RQNRNDYRQD GNGYRQNGDD YRQNRDGYRQ IGDGFRQNRD GYRQNGDGFR QNRDGYRQNG DDYRQNGNGH
601: HQPRPVHNGN GNANGRPGRF NGPKQIAVTA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.