Factsheet for VIT_01s0011g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	51.65	50.0
GSMUA_Achr4P00640_001	Banana	cytosol	35.54	44.44
VIT_14s0068g00310.t01	Wine grape	cytosol	48.35	44.23
TraesCS7D01G414000.1	Wheat	cytosol	14.26	43.4
TraesCS7A01G421800.1	Wheat	cytosol	14.26	43.12
TraesCS7B01G322100.1	Wheat	cytosol	14.05	42.77
VIT_00s0216g00030.t01	Wine grape	cytosol	41.53	38.07
VIT_00s2623g00010.t01	Wine grape	cytosol	20.45	35.48
KXG39124	Sorghum	cytosol	11.36	34.38
Os03t0418800-01	Rice	mitochondrion	35.54	32.89
HORVU3Hr1G089630.1	Barley	cytosol	34.09	30.39
TraesCS3B01G431000.2	Wheat	cytosol	34.09	30.16
TraesCS3A01G398600.1	Wheat	cytosol	34.09	30.11
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	33.68	29.91
Os07t0603100-01	Rice	extracellular	34.3	29.17
Zm00001d047289_P003	Maize	plasma membrane	34.09	28.25
HORVU0Hr1G007150.3	Barley	cytosol	16.12	27.96
VIT_05s0049g01940.t01	Wine grape	cytosol	27.27	27.79
VIT_07s0005g04300.t01	Wine grape	cytosol	26.45	27.53
EER94684	Sorghum	cytosol	34.09	26.61
Zm00001d022071_P002	Maize	cytosol	30.99	25.6
TraesCS2B01G202200.1	Wheat	cytosol	32.23	24.88
TraesCS2D01G183500.1	Wheat	cytosol	32.23	24.76
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	31.82	24.44
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	31.41	24.4
GSMUA_Achr1P24520_001	Banana	nucleus	41.74	20.45
OQU90215	Sorghum	cytosol	32.64	20.41

Protein Annotations

EntrezGene:100250757	wikigene:100250757	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	ProteinID:CBI27297
ProteinID:CBI27297.3	UniProt:D7T9X5	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EntrezGene:LOC100250757
wikigene:LOC100250757	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0001BE2DAA	ArrayExpress:VIT_01s0011g00400
EnsemblPlantsGene:VIT_01s0011g00400	EnsemblPlants:VIT_01s0011g00400.t01	unigene:Vvi.18304	RefSeq:XP_002273995	RefSeq:XP_002273995.1	RefSeq:XP_010649833.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:419906..428841

Molecular Weight (calculated)

52326.6 Da

IEP (calculated)

5.630

GRAVY (calculated)

-0.582

Length

484 amino acids

Sequence
(BLAST)

001: MAMQTEDSSP GPSAEVVGNV FVEQYYLVLY QSPELVYRFY HDSSVLSRPG PDGVMTTVTT SEGINDMILS FDYKGHKAEI LTADAQFSYK DGVVVLVTGC
101: LTGKDNVRRK FTQSFFLAPQ DNGYFVLNDV FRYMDERESL MVETIAVNDV NENSPVAPLT PEPESTHVLD HPKSNNTSPV EEDAADDEEV CDLTENEGVP
201: VSEEKVVCEI PVDPSKDVHP VSETVSAVIN EDAPKKSYAS IVKVMKGEMA TSSVHVPPGA VRAAKSNAKV SPANIERHVS TSAAPRAQVH SSNSAPSGNS
301: APSGNNAPSS NSTPTNNGAP RSNISPESGQ DHPEVGGHSI YIGNLPLNAT VQQVEGVFKK FGPIISGGIQ IRSYKGYGFG FVEFESLDSM HSAIKASPIT
401: IGGHQATIEQ KKTTLRVGND RGRPSSGRGG YRNDNFRGRG NFGGRGYGRN EFGYRGEFYG RGRAPNGRNS DPYQRDYQNR GGRV

Best Arabidopsis Sequence Match ( AT5G60980.4 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.