CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047289_P003	Maize	plasma membrane	82.58	87.67
KXG39124	Sorghum	cytosol	21.61	83.75
Os03t0418800-01	Rice	mitochondrion	51.13	60.61
HORVU3Hr1G089630.1	Barley	cytosol	50.0	57.09
TraesCS3B01G431000.2	Wheat	cytosol	50.16	56.86
TraesCS3A01G398600.1	Wheat	cytosol	50.0	56.57
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	49.19	55.96
Solyc10g083060.1.1	Tomato	cytosol	6.13	45.24
HORVU0Hr1G007150.3	Barley	cytosol	20.16	44.8
GSMUA_Achr4P00640_001	Banana	cytosol	27.42	43.93
Bra029343.1-P	Field mustard	cytosol	26.61	36.75
CDY42844	Canola	cytosol	26.13	36.4
KRH45051	Soybean	cytosol	27.1	36.36
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	28.87	35.8
Bra012989.1-P	Field mustard	cytosol	25.97	35.78
KRH01288	Soybean	cytosol	27.42	35.71
AT5G60980.3	Thale cress	cytosol	26.29	35.43
KRH56802	Soybean	cytosol, nucleus	26.13	35.06
KRH03143	Soybean	cytosol, nucleus	25.97	35.0
EES06843	Sorghum	cytosol	27.1	34.93
Bra035946.1-P	Field mustard	cytosol	25.48	34.8
CDY16827	Canola	cytosol	25.48	34.8
Solyc02g030530.1.1	Tomato	cytosol	15.81	34.39
VIT_01s0011g00400.t01	Wine grape	cytosol	26.61	34.09
CDY23092	Canola	mitochondrion	25.48	33.55
Solyc02g066830.2.1	Tomato	cytosol	21.29	33.08
CDY47006	Canola	cytosol	22.9	32.79
CDY02179	Canola	plastid	25.97	31.94
Solyc02g088920.2.1	Tomato	cytosol	20.0	31.39
VIT_14s0068g00310.t01	Wine grape	cytosol	26.77	31.38
Solyc02g032790.1.1	Tomato	cytosol	14.68	30.13
CDX87195	Canola	plastid	25.0	29.81
OQU81322	Sorghum	cytosol, plastid	20.65	27.95
PGSC0003DMT400003713	Potato	cytosol	21.94	27.53
OQU90215	Sorghum	cytosol	33.71	27.0
Solyc02g030490.1.1	Tomato	cytosol	10.32	26.02
KRH57274	Soybean	cytosol, mitochondrion	8.87	25.58
KXG36602	Sorghum	cytosol	18.06	25.51
EES11106	Sorghum	cytosol	15.97	22.35
GSMUA_Achr1P24520_001	Banana	nucleus	33.23	20.85

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:8066039	UniProt:C5WWJ3	EnsemblPlants:EER94684
ProteinID:EER94684	ProteinID:EER94684.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006810	GO:GO:0008150	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3001G335500	SUPFAM:SSF54427	SUPFAM:SSF54928	unigene:Sbi.9039	UniParc:UPI0001A83202
RefSeq:XP_002467686.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:62409107..62414004

Molecular Weight (calculated)

68690.9 Da

IEP (calculated)

8.485

GRAVY (calculated)

-1.070

Length

620 amino acids

Sequence
(BLAST)

001: MAGQAGNPVN HPISPHVIGG AFVQQYYKIL HEQPDQVHKF YQDSSILGRP DSNGTMVYVS TMSDINEKIM AMDVRNCLTE IETADAQLSH KDGVLIVVTG
101: SLTSEEGVFR RFTQSFFLAP QESGGYFVLT DIFRFILERK PAEIVQVATQ ENEISQNGRP ASETCSALPE PIPADRNVIS DHVTAESNVT ERQVSDPSAN
201: GTAIENNVKT QPPVQVPKED PKKALVAAPA PPTQTDVTKK SYASIVKVMK EGPLTPPVAK TTSSVPKQKP APKPVSKAVE GPEKPSVKPT QAIETGDGIV
301: AENNSSRNEQ GYSIFVKNLP YHANIEMVEE EFKKFGTIKP GGVQVRHNKV DRYVFGFVEY ESQQSMQAAI EASPVHMEDK EVGIEAKRAN SRGGRFQSGR
401: GAYHGDNFRG RGSGYVDNAS YRSSDNFNRR NEGEMYNRRN EGEFYNRRND GGENYIRRND GGENYNRRND GGENYIRRND GGENYNRRND GGGENYNRRN
501: DGGGENYNRR SDGGGENYNR RNDGGGENFN RRNDGGGENF NRRNDGGENF NRRNDGGENF NRRNNFRNQN EFPGRGRGPP PPGNSYHQNG NGVHPSRPYP
601: NGNGRFSRVN NGPKQAPVAA

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.