CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003033_P005	Maize	cytosol	81.94	75.94
TraesCS2D01G363800.1	Wheat	nucleus	64.33	63.47
TraesCS2A01G366900.1	Wheat	nucleus	63.88	63.03
TraesCS2B01G384400.1	Wheat	cytosol	63.43	62.72
Os04t0510500-01	Rice	cytosol	61.85	59.31
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	57.56	52.9
KXG36602	Sorghum	cytosol	34.09	34.4
EES06843	Sorghum	cytosol	25.06	23.08
KXG39124	Sorghum	cytosol	7.45	20.62
OQU81322	Sorghum	cytosol, plastid	17.38	16.81
EER94684	Sorghum	cytosol	22.35	15.97
OQU90215	Sorghum	cytosol	19.64	11.24

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:8064463	UniProt:C5YBZ2	EnsemblPlants:EES11106
ProteinID:EES11106	ProteinID:EES11106.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006810	GO:GO:0008150	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF22	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3006G143300	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0001A86DEB	RefSeq:XP_002446778.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:50567334..50572909

Molecular Weight (calculated)

49678.8 Da

IEP (calculated)

4.701

GRAVY (calculated)

-0.601

Length

443 amino acids

Sequence
(BLAST)

001: MDPMEQPEPE IAGHYYALQV GSYFLTGYYN VLTNQPHLTS EFYTDNSSVV RLDCETGRWS FGETVEVIND MMMSMNVSKV EVKTANFLES WGGAITLLVT
101: GLVQLKGYPV RKRFTQNIVL APKKDGYFIF SDIFKLICDE YDDQYPVADY NCADNMPQVD ASYTMAETGS DYLDGEPEAR ETVAPVENHV QHTVAPVENH
201: VQHQDPLEYK AGNVIYDETY PEEHIPSFPS STDVKRDSPL APPHPPLSPT LQEPVEEAPK TYASVLRRNV KATMATAETQ QTQQLAPQAQ SAPVQEKSNL
301: DNHRAVSTPE DEEEFLSVYV GNLSPSTSVF DLEKVFQAFG RIKPDGVAIR SRKEAGVFFG FVEFEDMSGI QNALSASPIE LNGRLVHVEE RRPNCGFPRG
401: RRGRGRADFS RDQAGGRYDG EYATRLKGTG HQKKSGRQYD SYY

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.