Factsheet for TraesCS2D01G363800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G366900.1	Wheat	nucleus	98.0	98.0
TraesCS2B01G384400.1	Wheat	cytosol	97.33	97.54
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	83.52	77.8
Os04t0510500-01	Rice	cytosol	67.04	65.15
EES11106	Sorghum	cytosol	63.47	64.33
Zm00001d003033_P005	Maize	cytosol	57.91	54.39
TraesCS7D01G280400.2	Wheat	cytosol	32.96	33.64
TraesCS2D01G277000.1	Wheat	plastid	25.84	23.87
TraesCS7D01G414000.1	Wheat	cytosol	7.35	20.75
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	22.49	18.53
TraesCS2D01G183500.1	Wheat	cytosol	19.82	14.13

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF22	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS2D01G363800	EnsemblPlants:TraesCS2D01G363800.1	TIGR:cd00590	TIGR:cd00780	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:469732789..469737579

Molecular Weight (calculated)

49713.7 Da

IEP (calculated)

4.548

GRAVY (calculated)

-0.559

Length

449 amino acids

Sequence
(BLAST)

001: MDELRREQHR IAGHPYAFEV GSYFLAGYYS VLASTPELAR QFYTNGSTVV RVDCQTMESQ FGETAEEIND ILMSMNVQKV EIKTANFLES WAGSITLLVT
101: GLVQLKGYPL RKRFSQSIIL APQVKPDGFF VDSDIFQLIC DEYDDHYQVA DYGYANQFPQ MAAHNTMTET ASDYVAEELE LKGFAAPADT DERANGIIYE
201: NHEMQQQDPL EFESAVNGET HFEDPAPSLP SSTDVKQDAS LAPPHPPSPP TPEEEPVGEP PKQTYASVLR ANAGQVIHST LVNRAMTGTT ESQLVGQTQP
301: VPVQEKSNLG TRRDVSVPED EEEFLSVYVG NLSPATSVFD LEKVFQAFGR IKPDGVAIRS RKEAGVFFGF VEYENMSGIQ NALDASPIEL NGRLVHVEER
401: RPGSGVFRGG GRRGRGRGQY GGRYDGDYAA RSKGNGYQRR GGHQYDGYD

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.