Factsheet for HORVU2Hr1G088550.9

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G363800.1	Wheat	nucleus	77.8	83.52
TraesCS2B01G384400.1	Wheat	cytosol	77.59	83.48
TraesCS2A01G366900.1	Wheat	nucleus	77.39	83.07
Os04t0510500-01	Rice	cytosol	56.43	58.87
EES11106	Sorghum	cytosol	52.9	57.56
Zm00001d003033_P005	Maize	cytosol	47.72	48.12
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	30.29	26.89
HORVU2Hr1G042280.3	Barley	plastid	13.07	19.03
HORVU0Hr1G007150.3	Barley	cytosol	10.79	18.64
HORVU3Hr1G089630.1	Barley	cytosol	19.29	17.13
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	15.77	12.2

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A287IUD9	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:HORVU2Hr1G088550	EnsemblPlants:HORVU2Hr1G088550.9	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF22	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000B482C5E	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:633737104..633742686

Molecular Weight (calculated)

52531.5 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.291

Length

482 amino acids

Sequence
(BLAST)

001: VGSYFLAGYY SVLASTPELA RQFYTDGSTV VRVDCQTMES QFGETAEEIN DILMSMNVEK VEIKTANFLQ SWAGAITLLV TGLVQLKGYP SRKRFSQSII
101: LAPQIKPDGF YVDSDIFQLI CDEYDEHYQV ADYGYANQFP QMVAHNTMTE TASDYVSEEL ELKGFAAPAD SDERGNGIIY ENHEMQQQDP LEFESAINGE
201: THFDDPAPSL PSSTDIKQDA SLAPPHPPSP PTPEEEPVGE PPKQTYASVL RANAGHQVMH STQVNRAMPG TAESQLVGQT QPVSVQEKSN LDTRQDVSVP
301: EDEEFLSVYV GNLSPATSVF DLEKVFQAFG KIKPDGVAIR SRKEAGVFFG FVEYENMSGI QNALDASPIE LNGRLVHVEE RRPGSGVFRG GGSGEGGEEQ
401: LISQGGNMVG ATMGITLHGQ REMATNGGAG ANTTATSSPT LLCWRMVASR LVLSIWCGLA IFLSQQSAIT WRTCVLLSCY RA

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.