Factsheet for HORVU3Hr1G089630.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G007150.3	Barley	cytosol	47.7	92.83
TraesCS3B01G431000.2	Wheat	cytosol	93.37	92.69
TraesCS3A01G398600.1	Wheat	cytosol	92.82	91.97
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	91.16	90.83
Os03t0418800-01	Rice	mitochondrion	60.41	62.72
EER94684	Sorghum	cytosol	57.09	50.0
Zm00001d047289_P003	Maize	plasma membrane	53.04	49.32
KXG39124	Sorghum	cytosol	12.52	42.5
GSMUA_Achr4P00640_001	Banana	cytosol	30.02	42.12
KRH45051	Soybean	cytosol	32.97	38.74
KRH01288	Soybean	cytosol	32.6	37.18
Solyc10g083060.1.1	Tomato	cytosol	5.71	36.9
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	32.6	35.4
KRH03143	Soybean	cytosol, nucleus	29.47	34.78
Bra012989.1-P	Field mustard	cytosol	28.73	34.67
CDY42844	Canola	cytosol	28.36	34.61
Bra029343.1-P	Field mustard	cytosol	28.55	34.52
KRH56802	Soybean	cytosol, nucleus	29.28	34.42
AT5G60980.3	Thale cress	cytosol	28.91	34.13
VIT_01s0011g00400.t01	Wine grape	cytosol	30.39	34.09
Bra035946.1-P	Field mustard	cytosol	28.18	33.7
CDY16827	Canola	cytosol	28.18	33.7
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	38.31	33.39
Solyc02g066830.2.1	Tomato	cytosol	24.31	33.08
Solyc02g088920.2.1	Tomato	cytosol	23.94	32.91
VIT_14s0068g00310.t01	Wine grape	cytosol	32.04	32.89
CDY23092	Canola	mitochondrion	28.36	32.7
HORVU2Hr1G042280.3	Barley	plastid	19.34	31.72
Solyc02g030530.1.1	Tomato	cytosol	16.57	31.58
CDY02179	Canola	plastid	28.91	31.15
CDY47006	Canola	cytosol	23.94	30.02
CDX87195	Canola	plastid	27.81	29.04
PGSC0003DMT400003713	Potato	cytosol	24.49	26.92
Solyc02g032790.1.1	Tomato	cytosol	14.18	25.5
Solyc02g030490.1.1	Tomato	cytosol	11.05	24.39
KRH57274	Soybean	cytosol, mitochondrion	9.58	24.19
GSMUA_Achr1P24520_001	Banana	nucleus	35.73	19.64
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	17.13	19.29
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	18.78	18.78

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:AK373772	ncoils:Coil	UniProt:F2EC97
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:HORVU3Hr1G089630	EnsemblPlants:HORVU3Hr1G089630.1
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI00020084D0	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EC97]

Coordinates

chrchr3H:-:629257831..629261447

Molecular Weight (calculated)

59043.0 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.724

Length

543 amino acids

Sequence
(BLAST)

001: MATQAGSPAA PRLSPQVICS VFVEQYYHIL HETPDQAHKF YQDASRIGRT GSDGVMEYVT TLPEISKKIM AMDFSKYLTE IETADSVLSH NGGVLIVVTG
101: SLTMVDDCQR FTQSFFLAPQ DGGGYFVLND IFRLITQRNL ENGKAQNDGP VAQTVAVPTA VVVECPTTDP VADVDVRNPT VNGTIVQSNQ TANGTVENNV
201: EPPAKVTKEV PKKISVAVSP SPPAQKDNPP PAQKDIPKKT PVAASPPPPS PAQKDVTKKT YASIVKVMKE APPTPVVKPK PSPKPATKPV TKAVEGSEKS
301: SVKPSQTAET TPAGTSVAKN KTSHDEQGYS VFIKGLPYNS TVQMVEEEFK KFGTIKPSGI QVRNNKIDQY CFGFVEFESE QSMQAAIQAS PLYIGDTEVG
401: IEQKRTSTRV VNGVVMNAGG GGRFQYGRGH RGDNFRGRGG GYMNSASYRG GDNFNRRDDG EDFTRRDDGD NFNRRNDGGE NFNRRNDFRN RNEFSGRGRG
501: PPQGNGYHNH NGNGFHQPRP FQNDNGRYAR VNNGPKQTPV AAA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.