Factsheet for TraesCS3D01G392700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G431000.2	Wheat	cytosol	97.43	97.08
TraesCS3A01G398600.1	Wheat	cytosol	95.96	95.44
HORVU3Hr1G089630.1	Barley	cytosol	90.83	91.16
Os03t0418800-01	Rice	mitochondrion	57.43	59.85
EER94684	Sorghum	cytosol	55.96	49.19
Zm00001d047289_P003	Maize	plasma membrane	52.66	49.14
KXG39124	Sorghum	cytosol	12.48	42.5
GSMUA_Achr4P00640_001	Banana	cytosol	29.72	41.86
TraesCS7D01G414000.1	Wheat	cytosol	12.11	41.51
KRH45051	Soybean	cytosol	32.84	38.74
KRH01288	Soybean	cytosol	32.66	37.4
Solyc10g083060.1.1	Tomato	cytosol	5.69	36.9
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	33.21	36.2
Bra012989.1-P	Field mustard	cytosol	29.54	35.78
CDY42844	Canola	cytosol	28.99	35.51
Bra029343.1-P	Field mustard	cytosol	29.17	35.41
AT5G60980.3	Thale cress	cytosol	29.54	35.0
TraesCS2D01G277000.1	Wheat	plastid	31.19	34.98
CDY16827	Canola	cytosol	28.81	34.58
Bra035946.1-P	Field mustard	cytosol	28.81	34.58
KRH03143	Soybean	cytosol, nucleus	29.17	34.57
KRH56802	Soybean	cytosol, nucleus	29.17	34.42
TraesCS2D01G183500.1	Wheat	cytosol	39.45	34.13
Solyc02g066830.2.1	Tomato	cytosol	24.77	33.83
CDY23092	Canola	mitochondrion	29.17	33.76
VIT_01s0011g00400.t01	Wine grape	cytosol	29.91	33.68
Solyc02g088920.2.1	Tomato	cytosol	24.4	33.67
Solyc02g030530.1.1	Tomato	cytosol	17.43	33.33
VIT_14s0068g00310.t01	Wine grape	cytosol	31.56	32.51
CDY02179	Canola	plastid	29.72	32.14
CDY47006	Canola	cytosol	24.59	30.95
CDX87195	Canola	plastid	28.26	29.62
PGSC0003DMT400003713	Potato	cytosol	25.14	27.73
Solyc02g032790.1.1	Tomato	cytosol	14.68	26.49
Solyc02g030490.1.1	Tomato	cytosol	11.74	26.02
KRH57274	Soybean	cytosol, mitochondrion	9.91	25.12
TraesCS2D01G363800.1	Wheat	nucleus	18.53	22.49
TraesCS7D01G280400.2	Wheat	cytosol	17.06	21.14
GSMUA_Achr1P24520_001	Banana	nucleus	35.96	19.84

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS3D01G392700	EnsemblPlants:TraesCS3D01G392700.1	TIGR:cd00590	TIGR:cd00780	SEG:seg	:

Description

No Description!

Coordinates

chr3D:+:508066850..508070467

Molecular Weight (calculated)

59287.4 Da

IEP (calculated)

9.585

GRAVY (calculated)

-0.727

Length

545 amino acids

Sequence
(BLAST)

001: MATQAGTASA PRLSPQVICS VFVEQYYHIL HETPDQAHKF YQDTSRIGRT GSDGVMEYVT TLPEISKKIM AMDFSKYLTE IETADAVLSH NGGVLIVVTG
101: SLTMVDDFCQ RFTQSFFLAP QDGGGYFVLN DIFRLITQRN LENGRTQKDG PVAQSVADPA PAVVVERSTT DLVADMDVQN PTVNGTTVQS NPIANGAVEN
201: KVEPSVKVTK EVPKKTSVAV PPSPPAQKDN PPPAQKDIPK KTPVAASPPP SPAQKDVTKK TYASIVKVMK EGPPTPVVKP KPSPKPATKP PTKAVEGSEK
301: SSAKPPQAAE ATPAGTSVAK NKTPHDEQGF SIFIKGLPYN STVPMVEEEF KKFGTIKPDG IQVRNNKIDQ YCFGFVEFES QQSMQAAIQA SPLYIGDTEV
401: GIEQKRTSTR VVNGVVMNAG GGGRFQYGRG HRGDNFRGRG GGFMNSVSYR GGDNFNRRDE GEDFSRRDDG DNFNRRNDGG ENFNRRNDFR NRNELSGRGR
501: GTHQGNGYHH NGNGFHQPRP FQNENGNGRY ARVNNGPKQT PVAAA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.