CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45051	Soybean	cytosol	88.37	41.13
KRH01288	Soybean	cytosol	90.23	40.76
Solyc02g032790.1.1	Tomato	cytosol	34.42	24.5
Solyc02g030530.1.1	Tomato	cytosol	29.3	22.11
Solyc02g088920.2.1	Tomato	cytosol	40.47	22.03
Solyc02g030490.1.1	Tomato	cytosol	24.65	21.54
VIT_14s0068g00310.t01	Wine grape	cytosol	50.7	20.6
Solyc02g066830.2.1	Tomato	cytosol	37.21	20.05
GSMUA_Achr4P00640_001	Banana	cytosol	33.95	18.86
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	34.88	18.2
KXG39124	Sorghum	cytosol	13.49	18.12
PGSC0003DMT400003713	Potato	cytosol	40.0	17.41
KRH03143	Soybean	cytosol, nucleus	37.21	17.39
KRH56802	Soybean	cytosol, nucleus	36.74	17.1
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	36.28	16.77
TraesCS7A01G421800.1	Wheat	cytosol	12.09	16.25
TraesCS7B01G322100.1	Wheat	cytosol	11.63	15.72
TraesCS7D01G414000.1	Wheat	cytosol	11.63	15.72
KRH46640	Soybean	cytosol	29.3	13.64
KRG99633	Soybean	cytosol	28.84	13.03
HORVU0Hr1G007150.3	Barley	cytosol	16.74	12.9
KRH67452	Soybean	cytosol	25.58	12.17
KRG95733	Soybean	cytosol	24.65	11.78
KRH33563	Soybean	cytosol	24.19	11.04
KRG90305	Soybean	cytosol	24.19	10.97
KRG92252	Soybean	cytosol	23.26	10.64
Zm00001d047289_P003	Maize	plasma membrane	26.98	9.93
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	25.12	9.91
TraesCS3B01G431000.2	Wheat	cytosol	25.12	9.87
TraesCS3A01G398600.1	Wheat	cytosol	25.12	9.85
Os03t0418800-01	Rice	mitochondrion	23.72	9.75
HORVU3Hr1G089630.1	Barley	cytosol	24.19	9.58
Os07t0603100-01	Rice	extracellular	24.65	9.31
EER94684	Sorghum	cytosol	25.58	8.87
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	25.12	8.67
TraesCS2B01G202200.1	Wheat	cytosol	25.12	8.61
TraesCS2D01G183500.1	Wheat	cytosol	25.12	8.57
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	24.65	8.41
Zm00001d022071_P002	Maize	cytosol	22.79	8.36
GSMUA_Achr1P24520_001	Banana	nucleus	33.95	7.39
OQU90215	Sorghum	cytosol	24.19	6.72
Solyc10g083060.1.1	Tomato	cytosol	2.33	5.95

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	UniProt:A0A0R0JQS9	EMBL:ACUP02002823	EnsemblPlantsGene:GLYMA_05G051000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0030529
InterPro:IPR018222	EnsemblPlants:KRH57274	ProteinID:KRH57274	ProteinID:KRH57274.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	PFAM:PF02136	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF25	SUPFAM:SSF54427
UniParc:UPI0006EDFB95	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:4559290..4560361

Molecular Weight (calculated)

23493.7 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.706

Length

215 amino acids

Sequence
(BLAST)

001: MVTGCLTGKD NLRRKFAQSF FLAPQDNGYF VLNDVFRYVE DHEPSELPPV TGDGDAAAVT VTPETEPSHF ANSSAPDPTN SHVNKGQTVA ENAYEPSNHH
101: ERHIPIENVD NVEPHFQSNG NDDSQATELA SSAQEKKSYA SIVKVQKEGL VATKVYVQTN TLKSGPNKTE NKVVESVEST EVSEAALDSV NNPESSDAHE
201: EVEGHSIYIR NLPLM

Best Arabidopsis Sequence Match ( AT5G60980.1 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.