CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022071_P002	Maize	cytosol	59.43	78.5
Os07t0603100-01	Rice	extracellular	32.69	44.46
TraesCS7B01G322100.1	Wheat	cytosol	9.04	44.03
TraesCS7D01G414000.1	Wheat	cytosol	8.91	43.4
TraesCS7A01G421800.1	Wheat	cytosol	8.91	43.12
GSMUA_Achr4P00640_001	Banana	cytosol	19.51	39.02
TraesCS2B01G202200.1	Wheat	cytosol	31.4	38.76
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	31.52	38.73
TraesCS2D01G183500.1	Wheat	cytosol	31.4	38.57
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	30.62	38.04
Solyc10g083060.1.1	Tomato	cytosol	4.01	36.9
KRH45051	Soybean	cytosol	21.19	35.5
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	22.74	35.2
KRH56802	Soybean	cytosol, nucleus	20.54	34.42
KRH03143	Soybean	cytosol, nucleus	20.28	34.13
EER94684	Sorghum	cytosol	27.0	33.71
AT5G60980.3	Thale cress	cytosol	19.9	33.48
Bra012989.1-P	Field mustard	cytosol	19.38	33.33
KRH01288	Soybean	cytosol	20.41	33.19
KXG39124	Sorghum	cytosol	6.85	33.12
Bra029343.1-P	Field mustard	cytosol	19.12	32.96
Solyc02g088920.2.1	Tomato	cytosol	16.8	32.91
CDY42844	Canola	cytosol	18.86	32.81
VIT_01s0011g00400.t01	Wine grape	cytosol	20.41	32.64
EES06843	Sorghum	cytosol	20.16	32.43
Solyc02g066830.2.1	Tomato	cytosol	16.67	32.33
Solyc02g030530.1.1	Tomato	cytosol	11.76	31.93
Bra035946.1-P	Field mustard	cytosol	18.48	31.5
CDY16827	Canola	cytosol	18.48	31.5
CDY23092	Canola	mitochondrion	19.12	31.42
CDY02179	Canola	plastid	19.38	29.76
VIT_14s0068g00310.t01	Wine grape	cytosol	20.28	29.68
CDY47006	Canola	cytosol	16.02	28.64
CDX87195	Canola	plastid	18.86	28.08
Solyc02g032790.1.1	Tomato	cytosol	10.85	27.81
PGSC0003DMT400003713	Potato	cytosol	17.57	27.53
OQU81322	Sorghum	cytosol, plastid	16.02	27.07
KRH57274	Soybean	cytosol, mitochondrion	6.72	24.19
Solyc02g030490.1.1	Tomato	cytosol	7.49	23.58
KXG36602	Sorghum	cytosol	12.53	22.1
EES11106	Sorghum	cytosol	11.24	19.64
GSMUA_Achr1P24520_001	Banana	nucleus	23.26	18.22

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A1W0W7B2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0008150	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU90215	ProteinID:OQU90215	ProteinID:OQU90215.1	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3002G367200	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0009DC8CD8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:72698535..72704293

Molecular Weight (calculated)

82703.3 Da

IEP (calculated)

9.244

GRAVY (calculated)

-0.649

Length

774 amino acids

Sequence
(BLAST)

001: MVGDAASWHA RGAPQIRDAS LPSARHCELA RNHELTIAIS ENISPPSTAP PSSSNPSSDA ANARGGTTDG GPAAALEQLV VVMTSGQRHR SGNWNGEATG
101: DRFTPRRLRL ASVRAADSPR VRVDSLGFAV PVAGEGGVVS WWRRLRGPSR SQAMALEAGS PATSFTPQVV ANAFVKQYYQ TLRYARQDSY KFYNDSSILG
201: RADSNGKMMN VTTIDDIKEQ LVSTDFADCL IEIETVDAQP SHVDGVLILV AGYFTTDAVK QKFTQSFFLA PQENRGYYVL NDMFRLTQIS TEVKEVVVNH
301: DNKSTQITTL PNDEVVSTSA NVVSPVKNDD PVVETCVKVV NKDVEKVPEA STPTAEKAVN KDLEKIAEAA PAPCAPVEKA APAPRAPVEK AAPAPHAPVE
401: KAAPAPRAPV EKAAPAPRAP VEKAAPAPRA PVENAAPAPP APVEKAAPAP PAPVEKAAPA PPAPIEKAAP TPRAPVEKAA SAPPTPVVKS APAPPSSDEK
501: EVARKSYASI VKTMRESTQP APAARPAKPN PRPKVAQNVD KNVSSPSKPA HATDNALPGD KNVPKNKATD EPGYSIFVKN LPFDATVKMV EQEFSKFGAI
601: KSGGIQVKCQ PDQFCFGFVE FEAQQSMVAA IEASTVYFGT REAYVEEKRT KTRVVDGVIT RGDDNGQGFQ SGRGGYYGDN YKRQWGGQNN GYYHNGDNTR
701: NDYPGRVRGP QGNGYHQNGN GYHQNRNGYQ QNGNGYSGNG YQQRRPSNNN GYSNGRVERN NGPRQQQGQG PAAA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.