CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	93.35	93.54
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	77.13	77.29
GSMUA_Achr10P...	Banana	cytosol	41.79	53.32
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	42.41	53.26
GSMUA_Achr8P16490_001	Banana	cytosol	48.65	52.7
OQU81322	Sorghum	cytosol, plastid	49.06	51.53
GSMUA_Achr6P12010_001	Banana	cytosol	37.42	49.45
GSMUA_Achr9P01610_001	Banana	cytosol	33.06	40.77
GSMUA_Achr11P...	Banana	cytosol	24.12	40.42
GSMUA_Achr8P17500_001	Banana	cytosol	27.23	38.08
KXG39124	Sorghum	cytosol	10.6	31.88
KXG36602	Sorghum	cytosol	28.9	31.66
EER94684	Sorghum	cytosol	34.93	27.1
EES11106	Sorghum	cytosol	23.08	25.06
OQU90215	Sorghum	cytosol	32.43	20.16

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:8056061	UniProt:C5XSH4	EnsemblPlants:EES06843
ProteinID:EES06843	ProteinID:EES06843.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006810	GO:GO:0008150	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3004G151200	SUPFAM:SSF54427	SUPFAM:SSF54928	unigene:Sbi.5842	UniParc:UPI0001A85AE6
RefSeq:XP_002453867.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:47905502..47910047

Molecular Weight (calculated)

51067.3 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.540

Length

481 amino acids

Sequence
(BLAST)

001: MAAPQPAAPA PEAPPSAQVV GNAFVQQYYL VLHQSPDLVY RFYQDASRLA RPASAAGAAG MDSVTTMEAI SEKIMEMDVS KAEIRTVDSQ ESLGGGVTVL
101: VTGHLTGRDG VRREFSQSFF LAPQEKGYFV LNDIFRFVGD IPAPTAVEAQ PEADAVVPPV AAPLANGTAT PAVEPAIPDD HDAVPQQENH VVDRSPPQPE
201: EEDEAEVYNP PPEEVVDEEQ PVPEVINEVP NNVAPVAATT VAPVLQEEAP KKSYASIVKV MKEVPLPAPA PPTRPAPPKP EKQSPPAPTP VTDVPPFSSN
301: PDNSNIQEPE VDAHAIYVRN LPLNATETQL EDEFKKFGTI KQNGIQVRSN KIQGFCYGFV EFEDSTSVQS AIEASPVTIG GRQCYVEEKR TPGSRGSSRG
401: GRFAPGRGNN FRSEGTRGRG NYGGGRGYGR GEFSYRSDYG GRSGGRGGPA RGADVGYQRV DHAGYAGGRG GRTAAAGAPA K

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.