Factsheet for GSMUA_Achr3P02500_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	73.11	74.27
GSMUA_Achr6P12010_001	Banana	cytosol	68.67	72.25
GSMUA_Achr8P16490_001	Banana	cytosol	73.89	63.74
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	55.61	53.12
GSMUA_Achr11P...	Banana	cytosol	36.29	48.43
GSMUA_Achr9P01610_001	Banana	cytosol	44.65	43.85
GSMUA_Achr4P00640_001	Banana	cytosol	43.6	43.15
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	54.05	43.12
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	53.26	42.5
EES06843	Sorghum	cytosol	53.26	42.41
GSMUA_Achr8P17520_001	Banana	cytosol	18.02	42.33
Zm00001d050610_P001	Maize	plasma membrane	52.48	42.14
Os04t0372800-01	Rice	nucleus, plasma membrane	53.26	41.98
TraesCS2D01G277000.1	Wheat	plastid	52.48	41.36
TraesCS2B01G295400.1	Wheat	plastid	51.96	40.86
Zm00001d004070_P003	Maize	extracellular, plasma membrane	51.96	40.78
TraesCS2A01G278000.1	Wheat	nucleus	51.96	40.53
HORVU2Hr1G042280.3	Barley	plastid	34.73	40.18
GSMUA_Achr8P17510_001	Banana	cytosol	15.14	37.66
OQU81322	Sorghum	cytosol, plastid	44.39	37.12
GSMUA_Achr8P17500_001	Banana	cytosol	30.81	34.3
Zm00001d025165_P001	Maize	plastid	51.7	33.45
GSMUA_Achr2P10150_001	Banana	cytosol	31.07	26.44
GSMUA_Achr4P30210_001	Banana	cytosol	30.03	25.61
GSMUA_Achr11P...	Banana	cytosol	31.07	25.21
GSMUA_Achr1P24520_001	Banana	nucleus	43.86	17.0

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr3G02500_001	EnsemblPlants:GSMUA_Achr3P02500_001	EnsemblPlants:GSMUA_Achr3T02500_001	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M0SB68	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000295FD92
SEG:seg	:	:	:	:	:

Description

Putative Ras GTPase-activating protein-binding protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02500_001]

Coordinates

chr3:-:1657729..1663412

Molecular Weight (calculated)

41369.3 Da

IEP (calculated)

4.569

GRAVY (calculated)

-0.296

Length

383 amino acids

Sequence
(BLAST)

001: MAVQPSVAGR SPLSAQVVGN AFVQQYYHIL HQSPELVYRF YQESSKLGRP DAHGAMSLIT TTEAINEKIL SIGFVRVETK SVDAQESLGG GVIVLVTGFL
101: TGEDTVKRDF TQSFFLAPQD KGYYVLNDIF RFVEEADNQP EHQGLVNGTS APHVPEHGSP TQKEQHALEQ TSPSAVEDEG VSEVEVYNPS DNGEVVEEEE
201: PMGEVINEAP NTCQTAVVES RAVTTQEELP KKSYASIVKI LKGSSSAFVP ARIPSKPSSI KAESQALPTP AADVPASSFN AAESSNMQEA EADGYSIYVK
301: NLPLDATPAQ LEEEFKKFGA IKSGGIQVRS HKLQGFCFGF VEFEAASAVQ SAIEASPVII GGRQAYVEEK RTTGSRGKFL TLF

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.