Factsheet for GSMUA_Achr6P12010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	76.65	74.01
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	72.25	68.67
GSMUA_Achr8P16490_001	Banana	cytosol	73.35	60.14
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	55.77	50.62
GSMUA_Achr11P...	Banana	cytosol	39.01	49.48
GSMUA_Achr8P17520_001	Banana	cytosol	18.68	41.72
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	51.92	39.38
GSMUA_Achr9P01610_001	Banana	cytosol	41.76	38.97
HORVU2Hr1G042280.3	Barley	plastid	35.16	38.67
GSMUA_Achr4P00640_001	Banana	cytosol	40.93	38.5
Os04t0372800-01	Rice	nucleus, plasma membrane	50.55	37.86
EES06843	Sorghum	cytosol	49.45	37.42
Zm00001d050610_P001	Maize	plasma membrane	48.9	37.32
TraesCS2D01G277000.1	Wheat	plastid	48.63	36.42
TraesCS2B01G295400.1	Wheat	plastid	48.63	36.34
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	47.25	35.83
OQU81322	Sorghum	cytosol, plastid	45.05	35.81
Zm00001d004070_P003	Maize	extracellular, plasma membrane	47.8	35.66
TraesCS2A01G278000.1	Wheat	nucleus	48.08	35.64
GSMUA_Achr8P17510_001	Banana	cytosol	14.84	35.06
Zm00001d025165_P001	Maize	plastid	48.9	30.07
GSMUA_Achr8P17500_001	Banana	cytosol	28.3	29.94
GSMUA_Achr2P10150_001	Banana	cytosol	27.75	22.44
GSMUA_Achr4P30210_001	Banana	cytosol	26.92	21.83
GSMUA_Achr11P...	Banana	cytosol	28.3	21.82
GSMUA_Achr1P24520_001	Banana	nucleus	41.76	15.38

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr6G12010_001	EnsemblPlants:GSMUA_Achr6P12010_001	EnsemblPlants:GSMUA_Achr6T12010_001	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M0T699	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000296CA38	SEG:seg

Description

nuclear transport factor 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G12010_001]

Coordinates

chr6:+:7945616..7948061

Molecular Weight (calculated)

39259.3 Da

IEP (calculated)

4.185

GRAVY (calculated)

-0.406

Length

364 amino acids

Sequence
(BLAST)

001: MAAQPSSAER SSFSAQVVGN AFVQQYYHVL QQSPEHVYRF YQDSSKLGRP DAHGAMSSVT STDAINAKIL SMGSVRAEMT SVDAQESLGG GVIVLVTGHL
101: TGEDNVKRDF TQSFFLARQD KGFYVLNDIF RFVEEVDHQQ GHQSLANDSG APHAPESDLP PEEEQHAPDQ TDVLPVEEEE VNEEEVYNPS DNGEVVEEEE
201: PTGEVINEVP SNSESNAVTA QEEMPKKSYA SIVKVMKDSA SVSVPTRASS MPTSIKAEPQ AIPAPPAAPA SDMSASSSAA AESSNVQEAE TDGYSVYVKS
301: LPMDATPAQL EEVFKKFGPI KPGGIQVRSH KLQGFCFGFV EFEVTSAVQS AIEVNLYMPS LTSI

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.