Factsheet for GSMUA_Achr8P17500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17520_001	Banana	cytosol	29.65	62.58
GSMUA_Achr8P17510_001	Banana	cytosol	19.48	43.51
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	34.3	30.81
GSMUA_Achr8P16490_001	Banana	cytosol	39.53	30.63
GSMUA_Achr9P01610_001	Banana	cytosol	34.59	30.51
GSMUA_Achr10P...	Banana	cytosol	32.56	29.71
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	33.72	28.93
GSMUA_Achr6P12010_001	Banana	cytosol	29.94	28.3
GSMUA_Achr4P00640_001	Banana	cytosol	31.69	28.17
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	38.66	27.71
Zm00001d050610_P001	Maize	plasma membrane	37.79	27.25
EES06843	Sorghum	cytosol	38.08	27.23
TraesCS2D01G277000.1	Wheat	plastid	38.37	27.16
TraesCS2B01G295400.1	Wheat	plastid	38.37	27.1
TraesCS2A01G278000.1	Wheat	nucleus	38.66	27.09
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	37.79	27.08
GSMUA_Achr11P...	Banana	cytosol	22.38	26.83
Os04t0372800-01	Rice	nucleus, plasma membrane	37.5	26.54
Zm00001d004070_P003	Maize	extracellular, plasma membrane	36.63	25.82
HORVU2Hr1G042280.3	Barley	plastid	20.35	21.15
OQU81322	Sorghum	cytosol, plastid	27.62	20.74
GSMUA_Achr4P30210_001	Banana	cytosol	26.45	20.27
GSMUA_Achr11P...	Banana	cytosol	26.74	19.49
GSMUA_Achr2P10150_001	Banana	cytosol	25.29	19.33
Zm00001d025165_P001	Maize	plastid	31.98	18.58
GSMUA_Achr1P24520_001	Banana	nucleus	36.92	12.85

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr8G17500_001	EnsemblPlants:GSMUA_Achr8P17500_001	EnsemblPlants:GSMUA_Achr8T17500_001	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M0TRA3	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000295913F	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G17500_001]

Coordinates

chr8:-:17419449..17421156

Molecular Weight (calculated)

37635.9 Da

IEP (calculated)

9.161

GRAVY (calculated)

-0.325

Length

344 amino acids

Sequence
(BLAST)

001: MVHQFYKESS KLGRPDDRGD VTSVTTIDGI KEKIMATRLG VPEIRKVDSQ DSHNGGVLVH VTGRLIREDD VQRGFFQVFF LAPQETGYFV LNDILRYAGD
101: IDGQGSAIDR EETVPLPIDD VIATAYVMKP KKGGAVKESA AAASKAVPTP TSDTPISTSG AAGNNTSVCI KNIPFGATPA HLEEHFKRFG PIKPGGIQVR
201: TTKERPSCYG FVEFEMADSA RNAIKASPII ISGRQVYIEQ KKIFGSGGNC YIMMIQVALV SLQRMIIHQF TNEIYLFIFQ HNITARNQIN HCHPGFCAHA
301: FCSAVNDNRG RFPPGRGDGH LSAGARQHGN RSHFGGRAGN SRNY

Best Arabidopsis Sequence Match ( AT3G07250.1 )
(BLAST)

001: MDPRPNTAKV GDEFARQYYN TLQNAPENLY KLYKDKSTIS RPGLDGTMRV FTLSKDLKWR SPGSFDSVKI TSVTSQDSLK QGILVVVYGY LTFNERPARH
101: FTQVFFLVPQ EKGYIVCTDM FRFVDIPEAN AAIPPANDVI EEKVPETEGA ALRVSEPNHG FDNVPKLSCA SEGAAICAKK LPLDATIAFV ENAFKQFGEI
201: RRGGVEVRIN WHCTGKYAYV EFEEAEAANR AIMASPISID GYRTYVEKKY AYNKSADTGN GNSQDSQAIT EDAHIRVKDL PPNATVALVE SVFKQFGPIK
301: KGRIRVINPA NSNYWYAFVE FEEADAAKRA IQASPLNVDG HTTYVEQKQP YYEGYYESPS DGPGNIKRGE GVRGSLGNPI CNWQKMEEVR GTDVYDLQNW
401: QKIMNQSEEQ MKFQEEEGRQ YNQNRYTSEE VRGTEGVGLE EEEEEEENQN WEEQRKIQEE EGTESHEASV FLKRLPLDVT FALIEDALKK FGPINAISII
501: KSGPLYKFAF VDFEKADVAN RAIMASPVRI CEKNVNVQKK LSAGAGKRYT RPTCRDTSVP LGAESGHREQ GSQNRYGSEQ VRGTEAFDFW DWQWQKSKEE
601: QSKLQEEEGE IQVDHSWEEE HSKVLEEESK LQEEAVETQV DHSWDYEQIM EEQEEEESKQ NQTSYIEDIA AFFSGVL

Arabidopsis Description

RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein [Source:UniProtKB/TrEMBL;Acc:F4JED3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.