CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004070_P003	Maize	extracellular, plasma membrane	72.27	67.83
HORVU2Hr1G042280.3	Barley	plastid	44.98	62.24
Zm00001d025165_P001	Maize	plastid	72.49	56.08
TraesCS2B01G295400.1	Wheat	plastid	59.61	56.06
TraesCS2D01G277000.1	Wheat	plastid	59.39	55.97
TraesCS2A01G278000.1	Wheat	nucleus	59.39	55.4
Os04t0372800-01	Rice	nucleus, plasma membrane	58.73	55.35
EES06843	Sorghum	cytosol	51.53	49.06
GSMUA_Achr6P12010_001	Banana	cytosol	35.81	45.05
GSMUA_Achr10P...	Banana	cytosol	36.68	44.56
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	37.12	44.39
GSMUA_Achr8P16490_001	Banana	cytosol	37.77	38.96
GSMUA_Achr11P...	Banana	cytosol	23.58	37.63
GSMUA_Achr9P01610_001	Banana	cytosol	30.79	36.15
KXG39124	Sorghum	cytosol	10.7	30.62
GSMUA_Achr8P17500_001	Banana	cytosol	20.74	27.62
KXG36602	Sorghum	cytosol	22.05	23.01
EER94684	Sorghum	cytosol	27.95	20.65
EES11106	Sorghum	cytosol	16.81	17.38
OQU90215	Sorghum	cytosol	27.07	16.02

Protein Annotations

EnsemblPlants:OQU81322	EnsemblPlantsGene:SORBI_3006G041100	Gene3D:3.10.450.50	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:RBD_domain_sf	PANTHER:PTHR10693
PANTHER:PTHR10693:SF30	PFAM:PF02136	PFscan:PS50177	ProteinID:OQU81322	ProteinID:OQU81322.1	SEG:seg
SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000B8BA276	UniProt:A0A1Z5RC48	MapMan:16.9.1	:

Description

hypothetical protein

Coordinates

chr6:-:26388150..26391251

Molecular Weight (calculated)

49026.6 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.497

Length

458 amino acids

Sequence
(BLAST)

001: MASPPPPPPP AAASAPPAAA SGSPPPAQVV GNAFVHQYYN ILHQSPELVY RFYQEASRLG RPAGTGADGM DTVTTMDAIN EKIVSMGIDR AEIKAVDAQE
101: SLCGGVTVLV MGHLTGRNGV SREFVQSFFL APQEKGYFVL NDILRYVGEG VGDEGTKQQP APEVAADVET ATPAPILANG TVGGDTGTVP QNASPQPECQ
201: VAEPALNQKE EVVNGEEVCN PTNDVEKPVV EETLVPEDIN EVPNNVAVAP ISSPPVPLEE APKKSYASIV KVMKEYRPPG SAVPSRPAPL KTEKQASPAP
301: AQVADALAFT SNPQSGSFQD PEVDAHAIYV RSLPLNATPQ QLEEEFKRFG AIKHEGIQVR SNKIEEGKRH TGMLCAGRRE TWEIAGERTG KRANVRESQS
401: CVQRQREGCT GKLDALERRA WEKSESREQR RAHGEEYLLV RVSPASATGR SCCRGASA

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.