Factsheet for Zm00001d004070_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81322	Sorghum	cytosol, plastid	67.83	72.27
TraesCS2D01G277000.1	Wheat	plastid	69.67	69.96
TraesCS2B01G295400.1	Wheat	plastid	69.67	69.82
TraesCS2A01G278000.1	Wheat	nucleus	69.88	69.45
Os04t0372800-01	Rice	nucleus, plasma membrane	68.85	69.14
Zm00001d050610_P001	Maize	plasma membrane	63.11	64.57
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	62.5	63.54
Zm00001d025165_P001	Maize	plastid	74.8	61.66
HORVU2Hr1G042280.3	Barley	plastid	40.37	59.52
GSMUA_Achr8P16490_001	Banana	cytosol	48.16	52.93
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	40.78	51.96
GSMUA_Achr10P...	Banana	cytosol	39.34	50.93
GSMUA_Achr6P12010_001	Banana	cytosol	35.66	47.8
GSMUA_Achr9P01610_001	Banana	cytosol	32.79	41.03
GSMUA_Achr11P...	Banana	cytosol	22.75	38.68
GSMUA_Achr8P17500_001	Banana	cytosol	25.82	36.63
Zm00001d021999_P002	Maize	plasma membrane	27.87	31.05
Zm00001d047289_P003	Maize	plasma membrane	31.97	26.71
Zm00001d022071_P002	Maize	cytosol	31.97	26.62
Zm00001d003033_P005	Maize	cytosol	20.08	20.5

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A1D6EDA2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2
InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM18267.1	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0001CABB54	EnsemblPlantsGene:Zm00001d004070	EnsemblPlants:Zm00001d004070_P003
EnsemblPlants:Zm00001d004070_T003	SEG:seg	:	:	:	:

Description

RNA-binding protein-like

Coordinates

chr2:+:80075779..80081259

Molecular Weight (calculated)

51104.7 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.427

Length

488 amino acids

Sequence
(BLAST)

001: MASQPPPPAA AAASGAPPPA QVVGNAFVHQ YYNILHQSPE LVYRFYQEAS CLGRPAGTGA DGMDTVTTMD AINDKIVSMG IDRAEIKAVD AQESLCGGVS
101: VLVMGHLTGR NSVSRQFVQS FFLAPQEKGY FVLNDILRYV GEGGGDEGAE KQPAPEVAAD AETTTSAPIL ANGTVGGDAT TVPQDASPQP ECQVAEPALN
201: PKEEVLNGEV CNSLSDVEKP VAEETPVPDV INEVPNNVAV APPISSPPVP LKEAPKKSYA SIVKVMKEHR PLAPAVPSRP APPITEKQAS PAPTPVTEAP
301: AFSPNPQSGG FQDPEVDAHA IYVRSLPLNA TPQQLEEEFK RFGTIKHEGI QVRSNKIQGF CYGFVEFEDA SAVQAAIEAS PVTIGERQCF VEEKRTTGSR
401: GGGSRGGRFP PGRGGNFRGE GIRGRGTYNG GRGYGRGEFS YRSDYGGRGG GRGGSLHGGD VGYQRVDYSG TSSGRGARAP SAAAAMAK

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.