Factsheet for Zm00001d021999_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36602	Sorghum	cytosol	93.61	93.39
Os02t0131700-00	Rice	plastid	83.79	81.92
TraesCS7A01G281900.1	Wheat	nucleus	78.54	79.08
TraesCS7B01G179500.1	Wheat	nucleus	77.17	77.7
TraesCS7D01G280400.2	Wheat	cytosol	71.92	71.59
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	78.08	62.98
GSMUA_Achr2P10150_001	Banana	cytosol	46.8	45.56
GSMUA_Achr4P30210_001	Banana	cytosol	46.35	45.21
GSMUA_Achr11P...	Banana	cytosol	48.4	44.92
VIT_05s0049g01940.t01	Wine grape	cytosol	47.03	43.37
KRH33563	Soybean	cytosol	46.12	42.89
KRG90305	Soybean	cytosol	45.89	42.41
KRG92252	Soybean	cytosol	43.84	40.85
PGSC0003DMT400003781	Potato	cytosol	43.38	40.51
Solyc09g090940.2.1	Tomato	nucleus	42.92	40.17
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	32.42	29.58
Zm00001d050610_P001	Maize	plasma membrane	31.96	29.35
Zm00001d003033_P005	Maize	cytosol	31.74	29.08
Zm00001d004070_P003	Maize	extracellular, plasma membrane	31.05	27.87
Zm00001d025165_P001	Maize	plastid	27.85	20.61
Zm00001d047289_P003	Maize	plasma membrane	24.66	18.49
Zm00001d022071_P002	Maize	cytosol	21.92	16.38
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	3.42	2.75

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A1D6IIC3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2
InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM59235.1	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000221BB29	EnsemblPlantsGene:Zm00001d021999	EnsemblPlants:Zm00001d021999_P002
EnsemblPlants:Zm00001d021999_T002	SEG:seg	:	:	:	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Coordinates

chr7:+:167781355..167785408

Molecular Weight (calculated)

48382.1 Da

IEP (calculated)

4.891

GRAVY (calculated)

-0.594

Length

438 amino acids

Sequence
(BLAST)

001: MASAAAATQV GTYFLRNYYN LLQQTPDVVH QFYSEASTMV RVDDLTGTTA AANNMMDIHS LIMSLNFTQI EIKTANFVNS WGDGVLVMVS GLVQTKEYSH
101: QRKFIQMFFL APQEKGYFVL NDYFHFVDQE HVQPAPVIAQ EDYESNLAPN TVVETAPEYV HEEEAQQIAP EVHDVVENYT YSEPQQQVVS DNWGEEPLPE
201: EPPSFSNEMA VAPEEPVQAP PVPLPHVDEP VCEPVKKTYA SILKTAKAPA FPVAQQVPVS KTSHPTTESN QTQHSVMASS MGTEKPRSDV FGEGASHDDE
301: ESKSVYVGNV PSSVSEADLE NEFKKFGRLI PDGVAIRSRK ETGGYYAFVE FEELSGVHNA LKASPIEING RQIYVEERKP NSGIRGGRRG GRGRFSGGGR
401: GYSRGGGDEY NSNRGRSNGY GRAPHQERGI LGSHTPRN

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.