Factsheet for Zm00001d025165_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004070_P003	Maize	extracellular, plasma membrane	61.66	74.8
OQU81322	Sorghum	cytosol, plastid	56.08	72.49
TraesCS2D01G277000.1	Wheat	plastid	49.32	60.08
TraesCS2B01G295400.1	Wheat	plastid	49.16	59.75
Os04t0372800-01	Rice	nucleus, plasma membrane	48.82	59.47
TraesCS2A01G278000.1	Wheat	nucleus	49.16	59.27
HORVU2Hr1G042280.3	Barley	plastid	33.11	59.21
Zm00001d050610_P001	Maize	plasma membrane	43.41	53.88
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	42.91	52.92
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	33.45	51.7
GSMUA_Achr10P...	Banana	cytosol	32.6	51.19
GSMUA_Achr6P12010_001	Banana	cytosol	30.07	48.9
GSMUA_Achr8P16490_001	Banana	cytosol	34.29	45.72
GSMUA_Achr9P01610_001	Banana	cytosol	27.2	41.28
GSMUA_Achr11P...	Banana	cytosol	19.26	39.72
GSMUA_Achr8P17500_001	Banana	cytosol	18.58	31.98
Zm00001d021999_P002	Maize	plasma membrane	20.61	27.85
Zm00001d022071_P002	Maize	cytosol	23.82	24.06
Zm00001d047289_P003	Maize	plasma membrane	23.14	23.46
Zm00001d003033_P005	Maize	cytosol	15.2	18.83

Protein Annotations

EntrezGene:100193813	MapMan:16.9.1	Gene3D:3.30.70.330	UniProt:A0A1D6J5A2	ProteinID:AQK43117.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0008451530	EnsemblPlantsGene:Zm00001d025165	EnsemblPlants:Zm00001d025165_P001
EnsemblPlants:Zm00001d025165_T001	SEG:seg	:	:	:	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Coordinates

chr10:+:107136495..107140951

Molecular Weight (calculated)

62263.6 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.091

Length

592 amino acids

Sequence
(BLAST)

001: MASPPPPPAA AAAPAAAASG PPPPAQVVGN AFVHQYYNIL HQSPELVYRF YQESSRLGRP SGTGDDGMET VTSMDVSSSP TPPLLLSRGP DLGAPGPNSH
101: LNGGDFGVAC ASDCVYVRVR LVLQAINDKI VSMGIDRAEI KAVDAQESLC GGVTVLVMGH LTGRNSVSRE FVQSFFLAPQ EKGYFVLNDI LRYVGEEGGD
201: EGGEQQPATE VAADVVAADV EAATPASILA NGTVGGDTVT VPQDASPQPE CQVAEPALNP KEEVLNREVV CNPPNDVNPI VEETPVPEVI NEVPNNVGVA
301: PPISSPSAPP EEAPKKSYAS IVKVMKEYRP PAPAVPSRPA PPKTEKQSSP APALVADAPA FTPNPQSGSF QDPEVDAHAI YVRSLPLNAT PQQLEEEFKR
401: FGAIKHDGIQ VRSNKIQGFC YGFVEFEDAS AVQTAIEASP VTIGERQCYV EEKRTTGGSR GKKGYAFVCV LWKATIAVVA GEEGFHQLEV VTSEVKVLEA
501: VVHIMEAEGT EGASSIIDLI MEAEVAAGVA HRVVMSATSG STTLVQPAVV VPGHHQPPLL SQSEFLVGYG LCFMATIIVD QKSGGCGGFE FM

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.