Factsheet for Zm00001d047289_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94684	Sorghum	cytosol	87.67	82.58
KXG39124	Sorghum	cytosol	21.92	80.0
Os03t0418800-01	Rice	mitochondrion	51.03	56.98
TraesCS3B01G431000.2	Wheat	cytosol	49.83	53.2
HORVU3Hr1G089630.1	Barley	cytosol	49.32	53.04
TraesCS3A01G398600.1	Wheat	cytosol	49.49	52.74
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	49.14	52.66
Solyc10g083060.1.1	Tomato	cytosol	6.51	45.24
GSMUA_Achr4P00640_001	Banana	cytosol	29.97	45.22
HORVU0Hr1G007150.3	Barley	cytosol	20.89	43.73
Bra029343.1-P	Field mustard	cytosol	28.77	37.42
CDY42844	Canola	cytosol	28.25	37.08
KRH45051	Soybean	cytosol	29.28	37.01
Bra012989.1-P	Field mustard	cytosol	28.25	36.67
KRH01288	Soybean	cytosol	29.45	36.13
AT5G60980.3	Thale cress	cytosol	28.25	35.87
KRH56802	Soybean	cytosol, nucleus	28.25	35.71
KRH03143	Soybean	cytosol, nucleus	28.08	35.65
CDY16827	Canola	cytosol	27.57	35.46
Bra035946.1-P	Field mustard	cytosol	27.57	35.46
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	30.31	35.4
Solyc02g030530.1.1	Tomato	cytosol	17.12	35.09
CDY23092	Canola	mitochondrion	27.74	34.39
Solyc02g066830.2.1	Tomato	cytosol	23.46	34.34
VIT_01s0011g00400.t01	Wine grape	cytosol	28.25	34.09
CDY47006	Canola	cytosol	25.0	33.72
Zm00001d050610_P001	Maize	plasma membrane	27.23	33.33
Zm00001d022071_P002	Maize	cytosol	33.39	33.28
CDY02179	Canola	plastid	28.25	32.74
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	26.88	32.71
Solyc02g088920.2.1	Tomato	cytosol	21.92	32.41
Zm00001d004070_P003	Maize	extracellular, plasma membrane	26.71	31.97
Solyc02g032790.1.1	Tomato	cytosol	16.1	31.13
VIT_14s0068g00310.t01	Wine grape	cytosol	27.91	30.81
CDX87195	Canola	plastid	27.05	30.38
PGSC0003DMT400003713	Potato	cytosol	23.63	27.94
KRH57274	Soybean	cytosol, mitochondrion	9.93	26.98
Solyc02g030490.1.1	Tomato	cytosol	11.3	26.83
Zm00001d021999_P002	Maize	plasma membrane	18.49	24.66
Zm00001d025165_P001	Maize	plastid	23.46	23.14
GSMUA_Achr1P24520_001	Banana	nucleus	34.42	20.34
Zm00001d003033_P005	Maize	cytosol	14.38	17.57

Protein Annotations

EntrezGene:100382436	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	ProteinID:AQL06087.1	ProteinID:AQL06088.1
ProteinID:AQL06089.1	EMBL:BT064346	UniProt:C0P7S7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0001948B5A	EnsemblPlantsGene:Zm00001d047289	EnsemblPlants:Zm00001d047289_P003	EnsemblPlants:Zm00001d047289_T003	SEG:seg

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Coordinates

chr9:+:125637199..125640930

Molecular Weight (calculated)

64820.7 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.936

Length

584 amino acids

Sequence
(BLAST)

001: MAGQAGNPVN HPISPHVISG AFVQQYYHIL HEQPDQVHKF YQDSSILGRP DSNGIMAYVT TMRDINEKIM SMDFRNCLTE IETADAQLSH KDGVLIVVTG
101: SLTSDEGVFR RFTQSFFLAP QESGGYFVLT DVFRFISERK PAEINQVATQ ENEISQNVRP ASETCSALPE PIPADGSVIS DHVTADSNVT EKQISDLSAN
201: GTAIESNDNT QPPVQVPKED PKKALLVAPP PPTQMDVTKK SYASIVKVMK EGPPTPVVKT TSSVSKQKPA PKPVSTAVEG LEKPSEKPTQ AIGTGDGIVA
301: QNNSSRNEQG YSIFIKNLPF HANIEMVEEE FKKFGTIKPG GVQVRHNKVD RFGFGFVEYE SQQSMQAAIE ASPIRMADKE VGIEAKRANS RGGRFQSGRG
401: VYHGDNFRGR GSGYVDNTNY RSSGSFNRQN EGEMYNRRNE GEMYNRRNEG DFYNHRNEGE FYNRRNDGGE NYNRRNDGGE NYNRRNDGGK NFSRRNDSGT
501: ENFNRRNDGG GENFSRRNDG VGENFNVRND GVGENFNRRN NFRNQNDFPG RGRGSPTPGN SYYQNGNGRF SRVNNGAKQA PVAA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.