Factsheet for HORVU0Hr1G007150.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G089630.1	Barley	cytosol	92.83	47.7
KXG39124	Sorghum	cytosol	23.66	41.25
Solyc10g083060.1.1	Tomato	cytosol	10.04	33.33
Os03t0418800-01	Rice	mitochondrion	52.33	27.92
HORVU2Hr1G042280.3	Barley	plastid	29.75	25.08
GSMUA_Achr4P00640_001	Banana	cytosol	32.97	23.77
Zm00001d047289_P003	Maize	plasma membrane	43.73	20.89
EER94684	Sorghum	cytosol	44.8	20.16
KRH45051	Soybean	cytosol	31.18	18.83
KRH03143	Soybean	cytosol, nucleus	30.47	18.48
KRH56802	Soybean	cytosol, nucleus	30.11	18.18
Bra029343.1-P	Field mustard	cytosol	29.03	18.04
CDY47006	Canola	cytosol	27.96	18.01
Bra012989.1-P	Field mustard	cytosol	29.03	18.0
CDY42844	Canola	cytosol	28.67	17.98
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	31.9	17.8
AT5G60980.3	Thale cress	cytosol	28.67	17.39
KRH01288	Soybean	cytosol	29.39	17.23
CDY23092	Canola	mitochondrion	29.03	17.2
CDY16827	Canola	cytosol	27.96	17.18
Bra035946.1-P	Field mustard	cytosol	27.96	17.18
KRH57274	Soybean	cytosol, mitochondrion	12.9	16.74
CDY02179	Canola	plastid	29.39	16.27
VIT_01s0011g00400.t01	Wine grape	cytosol	27.96	16.12
VIT_14s0068g00310.t01	Wine grape	cytosol	30.11	15.88
Solyc02g030490.1.1	Tomato	cytosol	13.62	15.45
PGSC0003DMT400003713	Potato	cytosol	27.24	15.38
Solyc02g032790.1.1	Tomato	cytosol	16.13	14.9
Solyc02g030530.1.1	Tomato	cytosol	15.05	14.74
CDX87195	Canola	plastid	27.24	14.62
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	30.11	13.48
Solyc02g088920.2.1	Tomato	cytosol	19.0	13.42
Solyc02g066830.2.1	Tomato	cytosol	17.56	12.28
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	18.64	10.79
GSMUA_Achr1P24520_001	Banana	nucleus	32.62	9.21
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	17.56	9.02

Protein Annotations

EnsemblPlants:HORVU0Hr1G007150.3	EnsemblPlantsGene:HORVU0Hr1G007150	Gene3D:3.10.450.50	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	PFAM:PF02136	PFscan:PS50177	SEG:seg
SUPFAM:SSF54427	UniParc:UPI000B47CE5F	UniProt:A0A287DX69	MapMan:16.9.1	:	:

Description

No Description!

Coordinates

chrchrUn:-:41101282..41103903

Molecular Weight (calculated)

29832.0 Da

IEP (calculated)

4.644

GRAVY (calculated)

-0.322

Length

279 amino acids

Sequence
(BLAST)

001: MATQAGSPAA PRLSPQVICS VFVEQYYHIL HETPDQAHKF YQDASRIGRT GSDGVMEYVT TLPEISKKIM AMDFSKYLTE IETADSVLSH NGGVLIVVTG
101: SLTMVDDCQR FTQSFFLAPQ DGGGYFVLND IFRLITQRNL ENGKAQNDGP VAQTVAVPTA VVVECPTTDP VADVDVRNPT VNGTIVQSNQ TANGTVENNV
201: EPPAKVTKEV PKKISVAVSP SPPAQKDNPP PAQKDIPKKT PVAASPPASF SSSEGCHEED LCINCESHEG GPTNSSCQT

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.