Factsheet for VIT_17s0000g05240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

nucleus 2
mitochondrion 3
golgi 3
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03143	Soybean	cytosol, nucleus	55.8	60.65
KRH56802	Soybean	cytosol, nucleus	55.6	60.17
Bra012989.1-P	Field mustard	cytosol	47.2	52.44
VIT_01s0011g00400.t01	Wine grape	cytosol	50.0	51.65
AT5G60980.3	Thale cress	cytosol	47.4	51.52
CDY42844	Canola	cytosol	44.8	50.34
Bra029343.1-P	Field mustard	cytosol	45.0	50.11
CDY23092	Canola	mitochondrion	46.8	49.68
CDY16827	Canola	cytosol	45.0	49.56
Bra035946.1-P	Field mustard	cytosol	45.0	49.56
GSMUA_Achr4P00640_001	Banana	cytosol	37.8	48.84
VIT_14s0068g00310.t01	Wine grape	cytosol	51.0	48.2
CDY02179	Canola	plastid	47.8	47.42
CDX87195	Canola	plastid	45.8	44.04
CDY47006	Canola	cytosol	37.0	42.73
VIT_00s0216g00030.t01	Wine grape	cytosol	44.0	41.67
TraesCS7D01G414000.1	Wheat	cytosol	13.2	41.51
TraesCS7A01G421800.1	Wheat	cytosol	13.2	41.25
TraesCS7B01G322100.1	Wheat	cytosol	13.0	40.88
VIT_00s2623g00010.t01	Wine grape	cytosol	21.8	39.07
Os03t0418800-01	Rice	mitochondrion	37.6	35.95
KXG39124	Sorghum	cytosol	11.0	34.38
TraesCS3B01G431000.2	Wheat	cytosol	36.4	33.27
TraesCS3A01G398600.1	Wheat	cytosol	36.4	33.21
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	36.2	33.21
HORVU3Hr1G089630.1	Barley	cytosol	35.4	32.6
HORVU0Hr1G007150.3	Barley	cytosol	17.8	31.9
Os07t0603100-01	Rice	extracellular	36.2	31.81
VIT_05s0049g01940.t01	Wine grape	cytosol	29.6	31.16
Zm00001d047289_P003	Maize	plasma membrane	35.4	30.31
VIT_07s0005g04300.t01	Wine grape	cytosol	27.8	29.89
EER94684	Sorghum	cytosol	35.8	28.87
Zm00001d022071_P002	Maize	cytosol	32.2	27.47
TraesCS2B01G202200.1	Wheat	cytosol	33.4	26.63
TraesCS2D01G183500.1	Wheat	cytosol	33.2	26.35
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	32.6	26.16
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	32.8	26.03
OQU90215	Sorghum	cytosol	35.2	22.74
GSMUA_Achr1P24520_001	Banana	nucleus	44.0	22.27

Protein Annotations

EntrezGene:100255231	wikigene:100255231	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	ProteinID:CBI15315
ProteinID:CBI15315.3	UniProt:D7SIK4	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737	GO:GO:0030529	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	EntrezGene:LOC100255231	wikigene:LOC100255231	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0001BE0BA5	ArrayExpress:VIT_17s0000g05240	EnsemblPlantsGene:VIT_17s0000g05240	EnsemblPlants:VIT_17s0000g05240.t01	unigene:Vvi.12000
RefSeq:XP_003634318	RefSeq:XP_003634318.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:5737662..5753467

Molecular Weight (calculated)

54474.2 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.525

Length

500 amino acids

Sequence
(BLAST)

001: MENKLRKLFL GFRSIIHLAS ITLKSLHSRF LFYMAMQEAT PAPLHSAAFV GNAFVDQYYP ILHQNPELLY KFYQDSSVLS RPDSSGSMTT VTTLQAINDK
101: IMSFHYGEYK MEIETADAQD SYKEGVTVLV TGSVTLKDNV KRKFGQSFFL APQDNGYFVL NDIFTYIEEK KSLQENFAPV DGINETAPTA ALTPDPEANH
201: VPDHLVVDPA TPSFEEEEDL NNVAEVCDPS DNEEGSVIEE EAVVEPPSIS SENEISTVVD SAPAAQEDAP KKSYASIVKV MKGSATSTPV FATSTVRAAP
301: ANIDQQLAGS AKSAPAPEAW TPTSDSAPES SNINEEGFSI YVRHLPLSAT VPQLEEEFKK FGPIKQDGIQ VRSNKQGFCF GFVEFESLSS MQSALEASPI
401: TIGDRQAVVE EKRTTTRVGA SGRGRYPPGR GGFRNDNFRG RGNFGGGRGY GRNESRNQGE YSGRARGPTG RNGEAYQRVN QNGSGKTGRQ GGMAWNSASS

Best Arabidopsis Sequence Match ( AT5G60980.4 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.