Factsheet for TraesCS3A01G398600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G431000.2	Wheat	cytosol	97.45	97.62
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	95.44	95.96
HORVU3Hr1G089630.1	Barley	cytosol	91.97	92.82
Os03t0418800-01	Rice	mitochondrion	58.58	61.38
EER94684	Sorghum	cytosol	56.57	50.0
Zm00001d047289_P003	Maize	plasma membrane	52.74	49.49
KXG39124	Sorghum	cytosol	12.41	42.5
TraesCS7A01G421800.1	Wheat	cytosol	12.41	42.5
GSMUA_Achr4P00640_001	Banana	cytosol	29.38	41.6
KRH45051	Soybean	cytosol	32.85	38.96
KRH01288	Soybean	cytosol	32.66	37.6
Solyc10g083060.1.1	Tomato	cytosol	5.66	36.9
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	33.21	36.4
Bra012989.1-P	Field mustard	cytosol	29.01	35.33
CDY42844	Canola	cytosol	28.65	35.28
Bra029343.1-P	Field mustard	cytosol	28.83	35.19
TraesCS2A01G278000.1	Wheat	nucleus	31.39	35.03
KRH03143	Soybean	cytosol, nucleus	29.38	35.0
KRH56802	Soybean	cytosol, nucleus	29.2	34.63
CDY16827	Canola	cytosol	28.65	34.58
Bra035946.1-P	Field mustard	cytosol	28.65	34.58
AT5G60980.3	Thale cress	cytosol	29.01	34.57
VIT_01s0011g00400.t01	Wine grape	cytosol	30.11	34.09
Solyc02g088920.2.1	Tomato	cytosol	24.45	33.92
Solyc02g066830.2.1	Tomato	cytosol	24.64	33.83
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	38.5	33.49
CDY23092	Canola	mitochondrion	28.65	33.33
Solyc02g030530.1.1	Tomato	cytosol	17.15	32.98
VIT_14s0068g00310.t01	Wine grape	cytosol	31.75	32.89
CDY02179	Canola	plastid	29.2	31.75
CDY47006	Canola	cytosol	24.45	30.95
CDX87195	Canola	plastid	28.1	29.62
PGSC0003DMT400003713	Potato	cytosol	25.18	27.94
Solyc02g032790.1.1	Tomato	cytosol	14.6	26.49
Solyc02g030490.1.1	Tomato	cytosol	11.68	26.02
KRH57274	Soybean	cytosol, mitochondrion	9.85	25.12
TraesCS7A01G281900.1	Wheat	nucleus	18.61	23.45
TraesCS2A01G366900.1	Wheat	nucleus	18.25	22.27
GSMUA_Achr1P24520_001	Banana	nucleus	35.58	19.74

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS3A01G398600	EnsemblPlants:TraesCS3A01G398600.1	TIGR:cd00590	TIGR:cd00780	SEG:seg	:

Description

No Description!

Coordinates

chr3A:+:645602290..645605941

Molecular Weight (calculated)

59735.8 Da

IEP (calculated)

9.564

GRAVY (calculated)

-0.754

Length

548 amino acids

Sequence
(BLAST)

001: MATQAGTAAA PRLSPQVICS VFVEQYYHIL HETPDQAHKF YQDTSRIGRT GSDGVMEYVT TLPEISKKIM AMDFSKYLTE IETADAVLSH NGGVLIVVTG
101: SLTMVDDFCQ RFTQSFFLAP QDGGGYFVLN DIFRLITQRN LENGRTQKDE PVAQSVADPA PAVVVERSTT DLVADVDVRN PTVNGTTVQS NLTANGAVEN
201: KVEPPVKVTK EVPKKTSVAV PPSPPAQKDN PPPAQKDIPK KTPVAASPPP PSPAQKDVTK KTYASIVKVM KEGPPTPVVK PKPSPKPATK PPTKAVEGSE
301: KSSVKPSQAA EGTPSGTSVG KNKTSHDEQG FSIFIKGLPY NSTVPMVEEE FKKFGTIKPD GIQVRNNKID QYCFGFVEFE SQQSMQAAIQ ASPLYIGDTE
401: VGIEQKRTST RVVNGVVMNA GGGGRFQYGR GHRGDNFRGR GGGYMNSASY RGGDNFNRRD DGEDFSRRDD GDNFNRRNDG SENFNRRNDF RNRNEFSGRG
501: RGPPHQGNGY HHHNGNGFHQ PRPFQNENGT GRYTRVNNGT KQTPVAAA

Best Arabidopsis Sequence Match ( AT5G48650.1 )
(BLAST)

001: MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY
101: FTLNERSRRK FTQTFFLAPQ EKGFFVLNDI LRFVNDDAKD NVPETIDGEV VSGINSTTPT IINGMKGSEQ AACVSVNPVC KEVSKPLDNE NAKDNVLVPE
201: IANEVARTEI TCKEVADDSQ KNYDPDDGLA DAPKKSYASV LKVTKDKFGV PAVSLPSPKK IPKDQEHQAP SDPSTGQILK DQGQQASSDP SQVIESDTVS
301: ESVDASENGH NQEAVAEGTS IYVRHLPFNA NIDMLEAEFK QFGAITNGGI QVINQRGLGY PYGFVEFEEA DAAHRAIEAS PVKIGGLRAF VEEKLSTSRG
401: KRGNGNVGYG NRNVGVGMRG RGSYGYGYDY RRGGRGPGGG GRSFNRRGNE YVASINSY

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q84JH2]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.