Factsheet for TraesCS2A01G278000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G277000.1	Wheat	plastid	96.74	97.74
TraesCS2B01G295400.1	Wheat	plastid	96.74	97.54
HORVU2Hr1G042280.3	Barley	plastid	56.42	83.69
Os04t0372800-01	Rice	nucleus, plasma membrane	71.89	72.63
Zm00001d004070_P003	Maize	extracellular, plasma membrane	69.45	69.88
OQU81322	Sorghum	cytosol, plastid	55.4	59.39
GSMUA_Achr8P16490_001	Banana	cytosol	47.66	52.7
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	40.53	51.96
GSMUA_Achr10P...	Banana	cytosol	39.71	51.72
Zm00001d025165_P001	Maize	plastid	59.27	49.16
GSMUA_Achr6P12010_001	Banana	cytosol	35.64	48.08
GSMUA_Achr9P01610_001	Banana	cytosol	31.98	40.26
GSMUA_Achr11P...	Banana	cytosol	23.42	40.07
TraesCS7A01G421800.1	Wheat	cytosol	13.03	40.0
GSMUA_Achr8P17500_001	Banana	cytosol	27.09	38.66
TraesCS7A01G281900.1	Wheat	nucleus	28.11	31.72
TraesCS3A01G398600.1	Wheat	cytosol	35.03	31.39
TraesCS2A01G366900.1	Wheat	nucleus	23.83	26.06
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	31.77	24.76

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF30	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS2A01G278000	EnsemblPlants:TraesCS2A01G278000.1	TIGR:cd00780	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:-:460902432..460908143

Molecular Weight (calculated)

51985.7 Da

IEP (calculated)

4.848

GRAVY (calculated)

-0.511

Length

491 amino acids

Sequence
(BLAST)

001: MAAPTPPPAA APAPAPAAAP GPTPPAQVVG NAFVQQYYNI LHQSPELVFR FYQEASRIGR PATTGADMDT VTTMEAINEK IMSMDIARAE IRGVDAQESL
101: CGGVTVLVTG HLTGKDDVCR EFAQSFFLAP QEKGYFVLND ILRYVGQGEA DQSLPPPQQQ PPAPELDAVV APAAALANGT VALVESVPRE QEASPQPEPD
201: LSESVPHTNE DEDPKEEVYN PPNDVEVPVV EETPVPEVID EVPNNVAASI PVSAPPVPHD EAPKKSYASI VKVMKAVLPP NSAVPYRPAP PKPEKQAPAP
301: ALSVAVDPPT FSPNPESSNI QDPEVDALAV YVKNLPLHAT PSQLEEEFKR FGTIKHDGIQ VRSHKIQGFC YGFIEFEDAS SVQSALAASP VTIDDRPCHV
401: EEKRTPGSRG SSRGRFPPGR GGNFRGEGMR GRGSYPGGRG YGRGEYNNYR SDFGGRGGGR GGSGRGGDVG YQRVDHSGTG GRGGARAAAK G

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.