Factsheet for Os04t0372800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 2
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G277000.1	Wheat	plastid	73.05	73.05
TraesCS2B01G295400.1	Wheat	plastid	72.43	72.28
TraesCS2A01G278000.1	Wheat	nucleus	72.63	71.89
Zm00001d004070_P003	Maize	extracellular, plasma membrane	69.14	68.85
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	64.61	65.42
HORVU2Hr1G042280.3	Barley	plastid	42.39	62.24
OQU81322	Sorghum	cytosol, plastid	55.35	58.73
GSMUA_Achr10P...	Banana	cytosol	42.59	54.91
GSMUA_Achr8P16490_001	Banana	cytosol	48.77	53.38
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	41.98	53.26
GSMUA_Achr6P12010_001	Banana	cytosol	37.86	50.55
Zm00001d025165_P001	Maize	plastid	59.47	48.82
GSMUA_Achr9P01610_001	Banana	cytosol	32.92	41.03
GSMUA_Achr11P...	Banana	cytosol	23.66	40.07
GSMUA_Achr8P17500_001	Banana	cytosol	26.54	37.5
Os03t0418800-01	Rice	mitochondrion	34.98	32.5
Os02t0131700-00	Rice	plastid	29.63	32.14
Os07t0603100-01	Rice	extracellular	35.19	30.05
Os04t0510500-01	Rice	cytosol	23.87	25.11
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	1.44	1.28

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:4335600	EMBL:AK101615	ProteinID:BAF14485.1
ProteinID:BAS88832.1	ProteinID:CAD40577.1	ProteinID:EAZ30426.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os04g0372800	EnsemblPlants:Os04t0372800-01	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30	UniProt:Q7XVK1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00001B10DD	RefSeq:XP_015636264.1
SEG:seg	:	:	:	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os04t0372800-01)

Coordinates

chr4:-:18172160..18177058

Molecular Weight (calculated)

51448.8 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.554

Length

486 amino acids

Sequence
(BLAST)

001: MASPPPPPPS AAAPGSPPSA QVVGNAFVHQ YYNILHQSPD LVHRFYQDGS RIGRPASPAA AEMDTVTTME AINAKIVSMD IVRAEIKAVD AQESLGGGVT
101: VLVTGHLTGS DDVRREFSQS FFLAPQEKGY FVLNDILRYV GGEGDQEVEP EPELELSFPP SQQPDSVPAP SANGTSVPRE QEAFSQPEQH VADPAPNAQE
201: ADLNGEEVYN PPNNTEGPVV EETPIPEVID EVPNNVAVAM PTPPAPAPAP VPQEEAPKKS YASIVKVMKE IPPQISAIPS RPAPPKQEKQ VAPAPVAPVA
301: DAPTFSPNPE SSNIQEAEVD AHAIYVRNLP LSATPEQLEE AFKKFGAIKP DGIQVRSHKI QGFCYGFVEF EDPSSVQSAI AGSPVTISDR QCYVEEKRTA
401: GSRGGGRGRF APGRGGNFRG EGMRGRGNYT GGRGYGRGEF NYRSDYGGRG AGRGGSSRGG DVGYQRVDHS AGRAARAPSG TSAVAK

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.