Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
23303719
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES06843 | Sorghum | cytosol | 77.29 | 77.13 |
Zm00001d050610_P001 | Maize | plasma membrane | 75.0 | 75.47 |
Zm00001d016528_P001 | Maize | cytosol, mitochondrion, plasma membrane | 73.33 | 73.33 |
Os04t0372800-01 | Rice | nucleus, plasma membrane | 65.42 | 64.61 |
GSMUA_Achr10P... | Banana | cytosol | 42.92 | 54.64 |
GSMUA_Achr3P02500_001 | Banana | cytosol, plastid | 43.12 | 54.05 |
GSMUA_Achr8P16490_001 | Banana | cytosol | 48.96 | 52.93 |
GSMUA_Achr6P12010_001 | Banana | cytosol | 39.38 | 51.92 |
GSMUA_Achr9P01610_001 | Banana | cytosol | 33.75 | 41.54 |
GSMUA_Achr11P... | Banana | cytosol | 24.58 | 41.12 |
GSMUA_Achr8P17500_001 | Banana | cytosol | 27.71 | 38.66 |
Os03t0418800-01 | Rice | mitochondrion | 37.5 | 34.42 |
Os02t0131700-00 | Rice | plastid | 28.75 | 30.8 |
Os07t0603100-01 | Rice | extracellular | 35.83 | 30.23 |
Os04t0510500-01 | Rice | cytosol | 23.33 | 24.24 |
Os02t0131800-01 | Rice | cytosol, peroxisome, plasma membrane | 1.25 | 1.1 |
Protein Annotations
MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | EntrezGene:4329411 | EMBL:AK070143 | ProteinID:BAD23032.1 |
ProteinID:BAS78783.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR000504 |
InterPro:IPR012677 | InterPro:IPR018222 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf |
EnsemblPlantsGene:Os02g0497700 | EnsemblPlants:Os02t0497700-01 | PFAM:PF00076 | PFAM:PF02136 | PFscan:PS50102 | PFscan:PS50177 |
PANTHER:PTHR10693 | PANTHER:PTHR10693:SF30 | UniProt:Q6K925 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
SUPFAM:SSF54427 | SUPFAM:SSF54928 | UniParc:UPI00003B0506 | RefSeq:XP_015626244.1 | SEG:seg | : |
Description
Similar to Ras-GTPase-activating protein SH3-domain binding protein-like. (Os02t0497700-01);Similar to Ras-GTPase-activating protein SH3-domain binding protein-like. (Os02t0497700-02)
Coordinates
chr2:-:17510359..17515694
Molecular Weight (calculated)
50882.2 Da
IEP (calculated)
4.746
GRAVY (calculated)
-0.509
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPQASPSP SAQVVGNAFV QQYYQILHQS PDLVYRFYQD ASRLGRPPAD RYGDMVSVTT MEAINEKIMA MDMSRAEIKT VDSQESLGGG VTVLVTGHLT
101: VRDGVCREFS QSFFLAPQEK GYFVLNDMFR YVGDGPTPAA AAAAEVQPEA DAVAPPLANG TATAPLQPAA PDYDAMPHEE PDVVENVAVP PEEEEEVYNP
201: PLEEVEGGAV EEEQSVPEVI NEVPNNVVPV VAPADAPVSH EEAPKKSYAS IVKVMKEAPV PAPIPATRPA PAARPAPPKP EKQSPAPPAP APVADATPFS
301: SNAESSNTHE PEVDAHAIYV RSLPLNATTT QLEDEFKKFG TIKPDGIQVR SHKIQGFCYG FVEFEEATAV QSAIEASPVM IGGRQCFVEE KRTPGSRGSS
401: RGGRFAPGRG NNNFRADGMR GRGNYSGGRS YGRGDFSYRS DYGGRGGGRG GSARGPDVGY QRVDGGRGGR TSAGPGAPAK
101: VRDGVCREFS QSFFLAPQEK GYFVLNDMFR YVGDGPTPAA AAAAEVQPEA DAVAPPLANG TATAPLQPAA PDYDAMPHEE PDVVENVAVP PEEEEEVYNP
201: PLEEVEGGAV EEEQSVPEVI NEVPNNVVPV VAPADAPVSH EEAPKKSYAS IVKVMKEAPV PAPIPATRPA PAARPAPPKP EKQSPAPPAP APVADATPFS
301: SNAESSNTHE PEVDAHAIYV RSLPLNATTT QLEDEFKKFG TIKPDGIQVR SHKIQGFCYG FVEFEEATAV QSAIEASPVM IGGRQCFVEE KRTPGSRGSS
401: RGGRFAPGRG NNNFRADGMR GRGNYSGGRS YGRGDFSYRS DYGGRGGGRG GSARGPDVGY QRVDGGRGGR TSAGPGAPAK
001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
Arabidopsis Description
AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.