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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 23303719
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES06843 Sorghum cytosol 77.29 77.13
Zm00001d050610_P001 Maize plasma membrane 75.0 75.47
Zm00001d016528_P001 Maize cytosol, mitochondrion, plasma membrane 73.33 73.33
Os04t0372800-01 Rice nucleus, plasma membrane 65.42 64.61
GSMUA_Achr10P... Banana cytosol 42.92 54.64
GSMUA_Achr3P02500_001 Banana cytosol, plastid 43.12 54.05
GSMUA_Achr8P16490_001 Banana cytosol 48.96 52.93
GSMUA_Achr6P12010_001 Banana cytosol 39.38 51.92
GSMUA_Achr9P01610_001 Banana cytosol 33.75 41.54
GSMUA_Achr11P... Banana cytosol 24.58 41.12
GSMUA_Achr8P17500_001 Banana cytosol 27.71 38.66
Os03t0418800-01 Rice mitochondrion 37.5 34.42
Os02t0131700-00 Rice plastid 28.75 30.8
Os07t0603100-01 Rice extracellular 35.83 30.23
Os04t0510500-01 Rice cytosol 23.33 24.24
Os02t0131800-01 Rice cytosol, peroxisome, plasma membrane 1.25 1.1
Protein Annotations
MapMan:16.9.1Gene3D:3.10.450.50Gene3D:3.30.70.330EntrezGene:4329411EMBL:AK070143ProteinID:BAD23032.1
ProteinID:BAS78783.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829InterPro:IPR000504
InterPro:IPR012677InterPro:IPR018222InterPro:NTF2InterPro:NTF2-like_dom_sfInterPro:Nuclear_transport_factor_2_eukInterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os02g0497700EnsemblPlants:Os02t0497700-01PFAM:PF00076PFAM:PF02136PFscan:PS50102PFscan:PS50177
PANTHER:PTHR10693PANTHER:PTHR10693:SF30UniProt:Q6K925InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360
SUPFAM:SSF54427SUPFAM:SSF54928UniParc:UPI00003B0506RefSeq:XP_015626244.1SEG:seg:
Description
Similar to Ras-GTPase-activating protein SH3-domain binding protein-like. (Os02t0497700-01);Similar to Ras-GTPase-activating protein SH3-domain binding protein-like. (Os02t0497700-02)
Coordinates
chr2:-:17510359..17515694
Molecular Weight (calculated)
50882.2 Da
IEP (calculated)
4.746
GRAVY (calculated)
-0.509
Length
480 amino acids
Sequence
(BLAST)
001: MAAPQASPSP SAQVVGNAFV QQYYQILHQS PDLVYRFYQD ASRLGRPPAD RYGDMVSVTT MEAINEKIMA MDMSRAEIKT VDSQESLGGG VTVLVTGHLT
101: VRDGVCREFS QSFFLAPQEK GYFVLNDMFR YVGDGPTPAA AAAAEVQPEA DAVAPPLANG TATAPLQPAA PDYDAMPHEE PDVVENVAVP PEEEEEVYNP
201: PLEEVEGGAV EEEQSVPEVI NEVPNNVVPV VAPADAPVSH EEAPKKSYAS IVKVMKEAPV PAPIPATRPA PAARPAPPKP EKQSPAPPAP APVADATPFS
301: SNAESSNTHE PEVDAHAIYV RSLPLNATTT QLEDEFKKFG TIKPDGIQVR SHKIQGFCYG FVEFEEATAV QSAIEASPVM IGGRQCFVEE KRTPGSRGSS
401: RGGRFAPGRG NNNFRADGMR GRGNYSGGRS YGRGDFSYRS DYGGRGGGRG GSARGPDVGY QRVDGGRGGR TSAGPGAPAK
Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)
001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
Arabidopsis Description
AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.