Factsheet for GSMUA_Achr11P11480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12010_001	Banana	cytosol	49.48	39.01
GSMUA_Achr10P...	Banana	cytosol	50.52	38.46
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	48.43	36.29
GSMUA_Achr8P16490_001	Banana	cytosol	52.96	34.23
GSMUA_Achr8P17520_001	Banana	cytosol	18.82	33.13
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	42.51	30.42
GSMUA_Achr9P01610_001	Banana	cytosol	37.98	27.95
GSMUA_Achr8P17510_001	Banana	cytosol	14.29	26.62
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	41.12	24.58
HORVU2Hr1G042280.3	Barley	plastid	28.22	24.47
GSMUA_Achr4P00640_001	Banana	cytosol	32.75	24.29
EES06843	Sorghum	cytosol	40.42	24.12
TraesCS2D01G277000.1	Wheat	plastid	40.42	23.87
Os04t0372800-01	Rice	nucleus, plasma membrane	40.07	23.66
TraesCS2B01G295400.1	Wheat	plastid	40.07	23.61
OQU81322	Sorghum	cytosol, plastid	37.63	23.58
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	39.37	23.54
Zm00001d050610_P001	Maize	plasma membrane	39.02	23.48
TraesCS2A01G278000.1	Wheat	nucleus	40.07	23.42
Zm00001d004070_P003	Maize	extracellular, plasma membrane	38.68	22.75
GSMUA_Achr8P17500_001	Banana	cytosol	26.83	22.38
Zm00001d025165_P001	Maize	plastid	39.72	19.26
GSMUA_Achr2P10150_001	Banana	cytosol	25.09	16.0
GSMUA_Achr11P...	Banana	cytosol	25.44	15.47
GSMUA_Achr4P30210_001	Banana	cytosol	24.04	15.37
GSMUA_Achr1P24520_001	Banana	nucleus	34.49	10.02

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr11G11480_001	EnsemblPlants:GSMUA_Achr11P11480_001	EnsemblPlants:GSMUA_Achr11T11480_001	InterPro:IPR018222
UniProt:M0RRC8	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	PFAM:PF02136	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	SUPFAM:SSF54427	SUPFAM:SSF54928	TMHMM:TMhelix
UniParc:UPI000296E62A	SEG:seg	:	:	:	:

Description

nuclear transport factor 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G11480_001]

Coordinates

chr11:+:10059689..10061758

Molecular Weight (calculated)

31128.8 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.255

Length

287 amino acids

Sequence
(BLAST)

001: MFTNKTTNQG GAFRKIATKE FPSSSKLGRQ DAHGALCSVT TTDVSARNLS FCCEKMGADI KTVDAQESLG GGVIVLTTGL LTYENNLKSN CTQSFFRAPQ
101: GKGYHVLNDI FRLVDEFDLQ QRHQGLGNGT GAPNAAERDL PPEQEEHAPG PTVPLTEERI GVVIDEVSNS SLAFVVESKV VTFQEEMPKK SYASIVKVMK
201: DNTSASIPAS SDMPASGSIA QSSNVQEAEA DGYSIYVKNL PLDATPAQLE EETKRHGPIR PDDLQVRSNK VIFLFIVLSL PFFVLIV

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.