Factsheet for Zm00001d050610_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	89.73	89.17
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	75.47	75.0
Zm00001d004070_P003	Maize	extracellular, plasma membrane	64.57	63.11
GSMUA_Achr10P...	Banana	cytosol	41.51	52.52
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	42.14	52.48
GSMUA_Achr8P16490_001	Banana	cytosol	47.59	51.13
GSMUA_Achr6P12010_001	Banana	cytosol	37.32	48.9
Zm00001d025165_P001	Maize	plastid	53.88	43.41
GSMUA_Achr9P01610_001	Banana	cytosol	32.7	40.0
GSMUA_Achr11P...	Banana	cytosol	23.48	39.02
GSMUA_Achr8P17500_001	Banana	cytosol	27.25	37.79
Zm00001d021999_P002	Maize	plasma membrane	29.35	31.96
Zm00001d047289_P003	Maize	plasma membrane	33.33	27.23
Zm00001d022071_P002	Maize	cytosol	31.03	25.26
Zm00001d003033_P005	Maize	cytosol	20.55	20.5

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A1D6Q2L8	ProteinID:AQK52830.1	ProteinID:AQK52831.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000842904F	EnsemblPlantsGene:Zm00001d050610
EnsemblPlants:Zm00001d050610_P001	EnsemblPlants:Zm00001d050610_T001	SEG:seg	:	:	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Coordinates

chr4:-:104008719..104014179

Molecular Weight (calculated)

51003.5 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.503

Length

477 amino acids

Sequence
(BLAST)

001: MAAPQPVAQA PEAPPSAQVV GNAFVQQYYL VLHQSPDLVY RFYQEASRLG RPASAAGAAG MDSVTTMEAI GEKIMEMDVS KAEIRTVDSQ ESLGGGVTVL
101: VTGHLTGRDG VRREFSQSFF LAPQEKGYFV LNDMFRFVGE IPAPTAVEAQ PEADAVVLSV AANGTSTLAV EPATPDDRNA VPQQEHHVVD RSPPQPEEEE
201: EAEVYDPPPE EVVDEEQPVP EVINEVPNNV AAVLATTVAP VLQEEAPKKS YASIVKVMKE VSLPAPAPPT RTAPPKPEKQ SPALAPVKDV LPFSSNPENG
301: NIQEPEDDAH AIYVRNLPLN ATETQLEDEF KKFGTIKQNG IQVRSNKIQG FCYGFVEFED STSVQSAIEA SPVMIGGRQC YIEEKRTPGS RGSSRGGRFV
401: PGRGNNFRSE GTRGRGNYGG GRGYGRGEFS YRSDYGGRSG GRGVSARGAD VGYQRVDHAG YAGGRGGRTV AAGAPAK

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.