Factsheet for Zm00001d022071_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90215	Sorghum	cytosol	78.5	59.43
Os07t0603100-01	Rice	extracellular	43.17	44.46
TraesCS7B01G322100.1	Wheat	cytosol	11.95	44.03
TraesCS7D01G414000.1	Wheat	cytosol	11.77	43.4
TraesCS7A01G421800.1	Wheat	cytosol	11.77	43.12
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	42.49	39.52
TraesCS2B01G202200.1	Wheat	cytosol	42.15	39.39
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	41.81	39.33
TraesCS2D01G183500.1	Wheat	cytosol	42.15	39.21
GSMUA_Achr4P00640_001	Banana	cytosol	25.26	38.24
Solyc10g083060.1.1	Tomato	cytosol	5.29	36.9
KRH45051	Soybean	cytosol	26.62	33.77
Zm00001d047289_P003	Maize	plasma membrane	33.28	33.39
KRH56802	Soybean	cytosol, nucleus	26.11	33.12
KRH03143	Soybean	cytosol, nucleus	25.77	32.83
KRH01288	Soybean	cytosol	26.45	32.56
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	27.47	32.2
Zm00001d004070_P003	Maize	extracellular, plasma membrane	26.62	31.97
Solyc02g066830.2.1	Tomato	cytosol	21.67	31.83
Bra012989.1-P	Field mustard	cytosol	24.23	31.56
AT5G60980.3	Thale cress	cytosol	24.57	31.3
Solyc02g030530.1.1	Tomato	cytosol	15.19	31.23
Bra029343.1-P	Field mustard	cytosol	23.89	31.18
Zm00001d050610_P001	Maize	plasma membrane	25.26	31.03
VIT_01s0011g00400.t01	Wine grape	cytosol	25.6	30.99
Solyc02g088920.2.1	Tomato	cytosol	20.82	30.89
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	25.26	30.83
CDY42844	Canola	cytosol	23.38	30.79
Bra035946.1-P	Field mustard	cytosol	23.38	30.18
CDY16827	Canola	cytosol	23.38	30.18
CDY23092	Canola	mitochondrion	23.89	29.72
VIT_14s0068g00310.t01	Wine grape	cytosol	25.94	28.73
CDY02179	Canola	plastid	24.06	27.98
Solyc02g032790.1.1	Tomato	cytosol	14.16	27.48
CDY47006	Canola	cytosol	20.31	27.48
CDX87195	Canola	plastid	23.38	26.35
PGSC0003DMT400003713	Potato	cytosol	22.18	26.32
Zm00001d025165_P001	Maize	plastid	24.06	23.82
KRH57274	Soybean	cytosol, mitochondrion	8.36	22.79
Solyc02g030490.1.1	Tomato	cytosol	9.56	22.76
Zm00001d021999_P002	Maize	plasma membrane	16.38	21.92
Zm00001d003033_P005	Maize	cytosol	14.68	17.99
GSMUA_Achr1P24520_001	Banana	nucleus	27.65	16.4

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:B4FWN0	EMBL:BT041518	EMBL:BT062727
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM59449.1
ProteinID:ONM59450.1	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI00017B7ED1	EnsemblPlantsGene:Zm00001d022071	EnsemblPlants:Zm00001d022071_P002	EnsemblPlants:Zm00001d022071_T002	SEG:seg	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Coordinates

chr7:-:169428759..169434059

Molecular Weight (calculated)

63029.7 Da

IEP (calculated)

6.724

GRAVY (calculated)

-0.538

Length

586 amino acids

Sequence
(BLAST)

001: MALEDGSPAT FTPQVIANAF VKQYYQTLRY AREDAYKFYN DKSILGRTDS NGKMICVTTI DDIKEQLVST DCADCLIEIE TVDAQPSHVD GVIILVAGYF
101: TTAVVKQKFI QSFFLAPQEN SGYYVLNDTF RLTGISFEVK VVAANHDNKS TQITTLPNEP EIDSFKESEV PGVPPAGNIL VNDGVISTSA NVVSPVKNDP
201: VVETCVKVVN EDVVKIPVAA PASTPVTAEE VVNKDFVKIP ESAPALPSSV EKAAPAPPAS VEKAAAAPPA SVEKGAPAPR TPVEKADPAP SAPVEKGAPA
301: LRAPVEKADP APRAPVEKEV TRKTYASVVK IPREDTQPAP AARPSKPNLN IKMVQNTEKN VSSPSKPAHA TVNALPGDKG VPKNKSPDEP GYSIFVKNLP
401: FEATVEMVEQ EFSKFGAIKS GGVQVKCQPD QFCFGFVEFE SQQSMLAAIE ASRVYFGTRE SYVEEKRTKT RVVDGVITRG DDNGNGGGGR FHSGRGGGYY
501: GDGYKRQWGG QNNGYYNGAD NMRNDYSGRV RGPQGNGHPQ NGHGYHQNGH GYYSGNGYQQ RRPNSNGNGL RVERNNGFRQ QGPASA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.