Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003713 | Potato | cytosol | 81.52 | 65.18 |
| Solyc02g030530.1.1 | Tomato | cytosol | 38.23 | 52.98 |
| Solyc02g066830.2.1 | Tomato | cytosol | 49.62 | 49.12 |
| Solyc02g032790.1.1 | Tomato | cytosol | 36.96 | 48.34 |
| KRH45051 | Soybean | cytosol | 54.68 | 46.75 |
| KRH01288 | Soybean | cytosol | 53.42 | 44.33 |
| Solyc02g030490.1.1 | Tomato | cytosol | 26.84 | 43.09 |
| KRH57274 | Soybean | cytosol, mitochondrion | 22.03 | 40.47 |
| VIT_14s0068g00310.t01 | Wine grape | cytosol | 51.39 | 38.37 |
| Solyc06g083300.2.1 | Tomato | nucleus | 42.78 | 35.5 |
| Solyc09g059310.2.1 | Tomato | extracellular, nucleus | 42.03 | 35.02 |
| GSMUA_Achr4P00640_001 | Banana | cytosol | 33.67 | 34.37 |
| Solyc06g007780.2.1 | Tomato | cytosol | 38.73 | 32.01 |
| KXG39124 | Sorghum | cytosol | 11.39 | 28.12 |
| TraesCS7D01G414000.1 | Wheat | cytosol | 11.14 | 27.67 |
| TraesCS7B01G322100.1 | Wheat | cytosol | 10.89 | 27.04 |
| TraesCS7A01G421800.1 | Wheat | cytosol | 10.89 | 26.88 |
| Os03t0418800-01 | Rice | mitochondrion | 35.44 | 26.77 |
| TraesCS3B01G431000.2 | Wheat | cytosol | 33.92 | 24.5 |
| TraesCS3A01G398600.1 | Wheat | cytosol | 33.92 | 24.45 |
| TraesCS3D01G392700.1 | Wheat | cytosol, nucleus, plastid | 33.67 | 24.4 |
| Os07t0603100-01 | Rice | extracellular | 34.94 | 24.25 |
| HORVU3Hr1G089630.1 | Barley | cytosol | 32.91 | 23.94 |
| Solyc06g083730.2.1 | Tomato | nucleus | 26.33 | 22.86 |
| Solyc09g090940.2.1 | Tomato | nucleus | 26.58 | 22.44 |
| Zm00001d047289_P003 | Maize | plasma membrane | 32.41 | 21.92 |
| Solyc05g012240.1.1 | Tomato | cytosol | 22.78 | 21.9 |
| HORVU2Hr1G032730.1 | Barley | cytosol, nucleus, peroxisome | 33.92 | 21.51 |
| TraesCS2B01G202200.1 | Wheat | cytosol | 33.16 | 20.89 |
| Zm00001d022071_P002 | Maize | cytosol | 30.89 | 20.82 |
| TraesCS2D01G183500.1 | Wheat | cytosol | 33.16 | 20.79 |
| TraesCS2A01G176100.1 | Wheat | cytosol, nucleus, plastid | 32.66 | 20.48 |
| EER94684 | Sorghum | cytosol | 31.39 | 20.0 |
| HORVU0Hr1G007150.3 | Barley | cytosol | 13.42 | 19.0 |
| Solyc10g083060.1.1 | Tomato | cytosol | 3.8 | 17.86 |
| GSMUA_Achr1P24520_001 | Banana | nucleus | 42.53 | 17.0 |
| OQU90215 | Sorghum | cytosol | 32.91 | 16.8 |
| Solyc05g012230.2.1 | Tomato | extracellular | 8.1 | 7.79 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 | UniProt:K4BC46 |
| InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF02136 |
| PFscan:PS50102 | PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF25 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54427 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc02g088920.2 | EnsemblPlants:Solyc02g088920.2.1 | UniParc:UPI00027688B1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:50841964..50846271
Molecular Weight (calculated)
42753.2 Da
IEP (calculated)
9.488
GRAVY (calculated)
-0.614
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVTTMKNI NDMICSLGYK NYKAEIKTAD AQQSYKDGVI VLVTGCLTGK DNTRKQFTQT FFLAPQDKGY FVLNDVLRYA EQVETDNSSE MVNAVKDVAP
101: VPLTPDPEPV HVLQPSNHRQ PSSHAEDIKI VEEVVHGSLE NEKVVGDERE IMVGAESHIN AEPATSVSRE DAPKKSYASI VSSQTKKGPA KIYVPSNSRM
201: APAKTEKQPV KSVAQAPVPE SSIHTASGGN ASESKDAQYR AEGHSIYIRN LPLNVTVAQL EVEFKRFGPI MQGGIQVRSN RQQGFCFGFV EFEDLNSMNS
301: AIQASPVTIG GLQAELEIKR TTSRVGSGRG RFPTGRGAGY RNENFRGRGN FSGAGRGYGR SDFNGGRGGR GGESYQQGRG RGGRRGGLSQ IPSSA
101: VPLTPDPEPV HVLQPSNHRQ PSSHAEDIKI VEEVVHGSLE NEKVVGDERE IMVGAESHIN AEPATSVSRE DAPKKSYASI VSSQTKKGPA KIYVPSNSRM
201: APAKTEKQPV KSVAQAPVPE SSIHTASGGN ASESKDAQYR AEGHSIYIRN LPLNVTVAQL EVEFKRFGPI MQGGIQVRSN RQQGFCFGFV EFEDLNSMNS
301: AIQASPVTIG GLQAELEIKR TTSRVGSGRG RFPTGRGAGY RNENFRGRGN FSGAGRGYGR SDFNGGRGGR GGESYQQGRG RGGRRGGLSQ IPSSA
001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
Arabidopsis Description
AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.